Class ECPeakSplitter.ECPeakSplitterMargin

java.lang.Object

org.jlab.service.ec.ECPeakSplitter.ECPeakSplitterMargin

All Implemented Interfaces:

ECPeakSplitter

Enclosing interface:

ECPeakSplitter

public static class ECPeakSplitter.ECPeakSplitterMargin
extends Object
implements ECPeakSplitter

Author:

gavalian

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	ECPeakSplitter.ECPeakSplitterMargin.Group	Group class for clustering nearby hits in an array.

Nested classes/interfaces inherited from interface ECPeakSplitter

ECPeakSplitter.ECPeakSplitterClas6, ECPeakSplitter.ECPeakSplitterMargin, ECPeakSplitter.ECPeakSplitterOriginal

Field Summary

Fields

Modifier and Type	Field	Description
static double	DEEP_FRACTION
static double	DROP_TRESHOLD
static double	MIN_HEIGHT

Constructor Summary

Constructors

Constructor	Description
ECPeakSplitterMargin()

Method Summary

Modifier and Type	Method	Description
List<ECPeakSplitter.ECPeakSplitterMargin.Group>	analyze(double[] buffer)
List<ECPeakSplitter.ECPeakSplitterMargin.Group>	cluster(double[] peak)	cluster groups in given buffer and return Group class containing indicies for each cluster group
void	evaluate(double[] original, double[] derived, double threshold)
double	max(double[] peak)	return maximum value in given array
int	min(double[] peak, int first, int last)	return the index of the minimum value in the given array between indicies first and last (inclusive)
List<ECPeak>	split(ECPeak peak)

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

DROP_TRESHOLD

public static double DROP_TRESHOLD

MIN_HEIGHT

public static double MIN_HEIGHT

DEEP_FRACTION

public static double DEEP_FRACTION

Constructor Details

ECPeakSplitterMargin

public ECPeakSplitterMargin()

Method Details

cluster

public List<ECPeakSplitter.ECPeakSplitterMargin.Group> cluster(double[] peak)

cluster groups in given buffer and return Group class containing indicies for each cluster group

Parameters:

peak -

Returns:

max

public double max(double[] peak)

return maximum value in given array

Parameters:

peak - peak array

Returns:

maximum value

min

public int min(double[] peak,
 int first,
 int last)

return the index of the minimum value in the given array between indicies first and last (inclusive)

Parameters:

peak - the array containing the peak data

first - first index to consider

last - last index to consider (inclusive)

Returns:

evaluate

public void evaluate(double[] original,
 double[] derived,
 double threshold)

analyze

public List<ECPeakSplitter.ECPeakSplitterMargin.Group> analyze(double[] buffer)

split

public List<ECPeak> split(ECPeak peak)

Specified by:

split in interface ECPeakSplitter