QwParity.cc

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/*------------------------------------------------------------------------*//*!
 
 \file QwParity.cc
 
 \brief main(...) function for the qwparity executable
 
*//*-------------------------------------------------------------------------*/
 
// System headers
#include <iostream>
#include <fstream>
#include <vector>
#include <new>
 
// ROOT headers
#include "Rtypes.h"
#include "TROOT.h"
#include "TFile.h"
#ifdef HAS_RNTUPLE_SUPPORT
#include "ROOT/RNTuple.hxx"
#include "ROOT/RNTupleModel.hxx"
#include "ROOT/RField.hxx"
#endif
 
// Qweak headers
#include "QwLog.h"
#include "QwRootFile.h"
#include "QwOptionsParity.h"
#include "QwEventBuffer.h"
#ifdef __USE_DATABASE__
#include "QwParityDB.h"
#endif //__USE_DATABASE__
#include "QwHistogramHelper.h"
#include "QwSubsystemArrayParity.h"
#include "QwHelicityPattern.h"
#include "QwEventRing.h"
#include "QwEPICSEvent.h"
#include "QwCombiner.h"
#include "QwCombinerSubsystem.h"
#include "QwPromptSummary.h"
#include "QwCorrelator.h"
#include "QwCorrelatorNew.h"
#include "GrandCorrelator.h"
#include "LRBCorrector.h"
#include "QwExtractor.h"
#include "QwDataHandlerArray.h"
 
// Qweak subsystems
// (for correct dependency generation)
#include "QwHelicity.h"
#include "QwFakeHelicity.h"
#include "QwBeamLine.h"
#include "QwBeamMod.h"
 
// Valgrind headers
#if __has_include(<valgrind/callgrind.h>)
#include <valgrind/callgrind.h>
#endif
 
Int_t main(Int_t argc, Char_t* argv[])
{
  ///  Enable implicit multi-threading in e.g. TTree::Fill
  ROOT::EnableImplicitMT();
 
  ///  Define the command line options
  DefineOptionsParity(gQwOptions);
 
  ///  Define additional command line arguments and the configuration filename,
  ///  and we define the options that can be used in them (using QwOptions).
  gQwOptions.AddOptions()("single-output-file", po::value<bool>()->default_bool_value(false), "Write a single output file");
  gQwOptions.AddOptions()("print-errorcounters", po::value<bool>()->default_bool_value(true), "Print summary of error counters");
  gQwOptions.AddOptions()("write-promptsummary", po::value<bool>()->default_bool_value(false), "Write PromptSummary");
  gQwOptions.AddOptions()("callgrind-instr-start-event-loop", po::value<bool>()->default_bool_value(false), "Start callgrind instrumentation with main event loop (with --instr-atstart=no)");
  gQwOptions.AddOptions()("callgrind-instr-stop-event-loop", po::value<bool>()->default_bool_value(false), "Stop callgrind instrumentation with main event loop (with --instr-atstart=no)");
 
  ///  Without anything, print usage
  if (argc == 1) {
    gQwOptions.Usage();
    exit(0);
  }
 
  ///  First, fill the search paths for the parameter files; this sets a
  ///  static variable within the QwParameterFile class which will be used by
  ///  all instances.
  ///  The "scratch" directory should be first.
  QwParameterFile::AppendToSearchPath(getenv_safe_string("QW_PRMINPUT"));
  QwParameterFile::AppendToSearchPath(getenv_safe_string("QWANALYSIS") + "/Parity/prminput");
  QwParameterFile::AppendToSearchPath(getenv_safe_string("QWANALYSIS") + "/Analysis/prminput");
 
  gQwOptions.SetCommandLine(argc, argv);
  gQwOptions.AddConfigFile("qweak_mysql.conf");
 
  gQwOptions.ListConfigFiles();
 
  /// Load command line options for the histogram/tree helper class
  gQwHists.ProcessOptions(gQwOptions);
  /// Setup screen and file logging
  gQwLog.ProcessOptions(&gQwOptions);
 
 
  ///  Create the event buffer
  QwEventBuffer eventbuffer;
  eventbuffer.ProcessOptions(gQwOptions);
 
  ///  Create the database connection
  #ifdef __USE_DATABASE__
  QwParityDB database(gQwOptions);
  #endif //__USE_DATABASE__
 
  //  QwPromptSummary promptsummary;
 
  ///  Start loop over all runs
  Int_t run_number = 0;
  while (eventbuffer.OpenNextStream() == CODA_OK) {
 
    ///  Begin processing for the first run
 
    run_number = eventbuffer.GetRunNumber();
    TString run_label = eventbuffer.GetRunLabel();
 
    ///  Set the current event number for parameter file lookup
    QwParameterFile::SetCurrentRunNumber(run_number);
    //  Parse the options again, in case there are run-ranged config files
    gQwOptions.Parse(kTRUE);
    eventbuffer.ProcessOptions(gQwOptions);
 
    //    if (gQwOptions.GetValue<bool>("write-promptsummary")) {
    QwPromptSummary promptsummary(run_number, eventbuffer.GetSegmentNumber());
    //    }
    ///  Create an EPICS event
    QwEPICSEvent epicsevent;
    epicsevent.ProcessOptions(gQwOptions);
    epicsevent.LoadChannelMap("EpicsTable.map");
 
 
    ///  Load the detectors from file
    QwSubsystemArrayParity detectors(gQwOptions);
    detectors.ProcessOptions(gQwOptions);
    detectors.ListPublishedValues();
 
    /// Create event-based correction subsystem
    //    TString name = "EvtCorrector";
    //    QwCombinerSubsystem corrector_sub(gQwOptions, detectors, name);
    //    detectors.push_back(corrector_sub.GetSharedPointerToStaticObject());
 
    /// Create the helicity pattern
    //    Instead of having run_label in the constructor of helicitypattern, it might
    //    make since to have it be an option for use globally
    QwHelicityPattern helicitypattern(detectors,run_label);
    helicitypattern.ProcessOptions(gQwOptions);
 
    ///  Create the event ring with the subsystem array
    QwEventRing eventring(gQwOptions,detectors);
    //  Make a copy of the detectors object to hold the
    //  events which pass through the ring.
    QwSubsystemArrayParity ringoutput(detectors);
 
    /// Create the data handler arrays
    QwDataHandlerArray datahandlerarray_evt(gQwOptions,ringoutput,run_label);
    QwDataHandlerArray datahandlerarray_mul(gQwOptions,helicitypattern,run_label);
    QwDataHandlerArray datahandlerarray_burst(gQwOptions,helicitypattern,run_label);
 
    ///  Create the burst sum
    QwHelicityPattern patternsum_per_burst(helicitypattern);
    patternsum_per_burst.DisablePairs();
 
    ///  Create the running sum
    QwSubsystemArrayParity eventsum(detectors);
    QwHelicityPattern patternsum(helicitypattern);
    patternsum.DisablePairs();
    QwHelicityPattern burstsum(helicitypattern);
    burstsum.DisablePairs();
 
    //  Initialize the database connection.
    #ifdef __USE_DATABASE__
    database.SetupOneRun(eventbuffer);
    #endif // __USE_DATABASE__
 
    //  Open the ROOT file (close when scope ends)
    QwRootFile *treerootfile  = NULL;
    QwRootFile *burstrootfile = NULL;
    QwRootFile *historootfile = NULL;
 
 
    if (gQwOptions.GetValue<bool>("single-output-file")) {
 
      treerootfile  = new QwRootFile(run_label);
      burstrootfile = historootfile = treerootfile;
      //  Construct a tree which contains map file names which are used to analyze data
      treerootfile->WriteParamFileList("mapfiles", detectors);
 
    } else {
 
      treerootfile  = new QwRootFile(run_label + ".trees");
      burstrootfile = new QwRootFile(run_label + ".bursts");
      historootfile = new QwRootFile(run_label + ".histos");
 
      //  Construct a tree which contains map file names which are used to analyze data
      detectors.PrintParamFileList();
      treerootfile->WriteParamFileList("mapfiles", detectors);
      burstrootfile->WriteParamFileList("mapfiles", detectors);
      historootfile->WriteParamFileList("mapfiles", detectors);
    }
    #ifdef __USE_DATABASE__
    if (database.AllowsWriteAccess()) {
      database.FillParameterFiles(detectors);
    }
    #endif // __USE_DATABASE__
    //  Construct histograms
    historootfile->ConstructHistograms("evt_histo", ringoutput);
    historootfile->ConstructHistograms("mul_histo", helicitypattern);
    burstrootfile->ConstructHistograms("burst_histo", patternsum_per_burst);
    detectors.ShareHistograms(ringoutput);
 
    //  Construct tree branches
    treerootfile->ConstructTreeBranches("evt", "MPS event data tree", ringoutput);
    treerootfile->ConstructTreeBranches("mul", "Helicity event data tree", helicitypattern);
    burstrootfile->ConstructTreeBranches("pr", "Pair tree", helicitypattern.GetPairYield(),"yield_");
    burstrootfile->ConstructTreeBranches("pr", "Pair tree", helicitypattern.GetPairAsymmetry(),"asym_");
    treerootfile->ConstructTreeBranches("slow", "EPICS and slow control tree", epicsevent);
    burstrootfile->ConstructTreeBranches("burst", "Burst level data tree", patternsum_per_burst, "|stat");
 
    // Construct RNTuple fields if enabled
#ifdef HAS_RNTUPLE_SUPPORT
    treerootfile->ConstructNTupleFields("evt", "MPS event data RNTuple", ringoutput);
    treerootfile->ConstructNTupleFields("mul", "Helicity event data RNTuple", helicitypattern);
    burstrootfile->ConstructNTupleFields("pr_yield", "Pair yield RNTuple", helicitypattern.GetPairYield(),"yield_");
    burstrootfile->ConstructNTupleFields("pr_asym", "Pair asymmetry RNTuple", helicitypattern.GetPairAsymmetry(),"asym_");
    treerootfile->ConstructNTupleFields("slow", "EPICS and slow control RNTuple", epicsevent);
    burstrootfile->ConstructNTupleFields("burst", "Burst level data RNTuple", patternsum_per_burst, "|stat");
#endif
 
    historootfile->ConstructHistograms("evt_histo",   datahandlerarray_evt);
    historootfile->ConstructHistograms("mul_histo",   datahandlerarray_mul);
    burstrootfile->ConstructHistograms("burst_histo", datahandlerarray_burst);
 
    datahandlerarray_evt.ConstructTreeBranches(treerootfile, "evt_");
    datahandlerarray_mul.ConstructTreeBranches(treerootfile);
    datahandlerarray_burst.ConstructTreeBranches(burstrootfile, "burst_", "|stat");
 
    // Construct RNTuple fields for data handlers if enabled
#ifdef HAS_RNTUPLE_SUPPORT
    datahandlerarray_evt.ConstructNTupleFields(treerootfile, "evt_");
    datahandlerarray_mul.ConstructNTupleFields(treerootfile);
    datahandlerarray_burst.ConstructNTupleFields(burstrootfile, "burst_", "|stat");
#endif
 
    treerootfile->ConstructTreeBranches("evts", "Running sum tree", eventsum, "|stat");
    treerootfile->ConstructTreeBranches("muls", "Running sum tree", patternsum, "|stat");
    burstrootfile->ConstructTreeBranches("bursts", "Burst running sum tree", burstsum, "|stat");
 
    // Construct RNTuple fields for additional data if enabled
#ifdef HAS_RNTUPLE_SUPPORT
    treerootfile->ConstructNTupleFields("evts", "Running sum RNTuple", eventsum, "|stat");
    treerootfile->ConstructNTupleFields("muls", "Running sum RNTuple", patternsum, "|stat");
    burstrootfile->ConstructNTupleFields("bursts", "Burst running sum RNTuple", burstsum, "|stat");
#endif
 
    // Summarize the ROOT file structure
    //treerootfile->PrintTrees();
    //treerootfile->PrintDirs();
 
 
    //  Clear the single-event running sum at the beginning of the runlet
    eventsum.ClearEventData();
    patternsum.ClearEventData();
    burstsum.ClearEventData();
    //  Clear the running sum of the burst values at the beginning of the runlet
    helicitypattern.ClearEventData();
    patternsum_per_burst.ClearEventData();
 
 
 
    //  Load the blinder seed from a random number generator for online mode
    if (eventbuffer.IsOnline() ){
      helicitypattern.UpdateBlinder();//this routine will call update blinder mechanism using a random number
    }else{
      //  Load the blinder seed from the database for this runlet.
#ifdef __USE_DATABASE__
      helicitypattern.UpdateBlinder(&database);
#endif // __USE_DATABASE__
    }
 
 
    //  Find the first EPICS event and try to initialize
    //  the blinder, but only for disk files, not online.
    if (! eventbuffer.IsOnline() ){
      QwMessage << "Finding first EPICS event" << QwLog::endl;
      while (eventbuffer.GetNextEvent() == CODA_OK) {
    if (eventbuffer.IsEPICSEvent()) {
      eventbuffer.FillEPICSData(epicsevent);
      if (epicsevent.HasDataLoaded()) {
        helicitypattern.UpdateBlinder(epicsevent);
        // and break out of this event loop
        break;
      }
    }
      }
      epicsevent.ResetCounters();
      //  Rewind stream
      QwMessage << "Rewinding stream" << QwLog::endl;
      eventbuffer.ReOpenStream();
    }
 
    // Start event loop instrumentation
#ifdef CALLGRIND_START_INSTRUMENTATION
    if (gQwOptions.GetValue<bool>("callgrind-instr-start-event-loop")) {
      QwMessage << "Starting callgrind instrumentation" << QwLog::endl;
      CALLGRIND_START_INSTRUMENTATION;
    }
#endif
 
    ///  Start loop over events
    while (eventbuffer.GetNextEvent() == CODA_OK) {
 
      //  First, do processing of non-physics events...
      if (eventbuffer.IsROCConfigurationEvent()) {
        //  Send ROC configuration event data to the subsystem objects.
        eventbuffer.FillSubsystemConfigurationData(detectors);
      }
 
      //  Secondly, process EPICS events, but not for online running,
      //  because the EPICS events get messed up by our 32-bit to 64-bit
      //  double ET system.
      if (! eventbuffer.IsOnline() && eventbuffer.IsEPICSEvent()) {
        eventbuffer.FillEPICSData(epicsevent);
    if (epicsevent.HasDataLoaded()){
      epicsevent.CalculateRunningValues();
      helicitypattern.UpdateBlinder(epicsevent);
 
      treerootfile->FillTreeBranches(epicsevent);
      treerootfile->FillTree("slow");
 
      // Fill RNTuple if enabled
#ifdef HAS_RNTUPLE_SUPPORT
      treerootfile->FillNTupleFields(epicsevent);
      treerootfile->FillNTuple("slow");
#endif
    }
      }
 
 
      //  Now, if this is not a physics event, go back and get a new event.
      if (! eventbuffer.IsPhysicsEvent()) continue;
 
 
      //  Fill the subsystem objects with their respective data for this event.
      eventbuffer.FillSubsystemData(detectors);
 
      //  Process the subsystem data
      detectors.ProcessEvent();
 
 
      // The event pass the event cut constraints
      if (detectors.ApplySingleEventCuts()) {
 
        // Add event to the ring
        eventring.push(detectors);
 
        // Check to see ring is ready
        if (eventring.IsReady()) {
      ringoutput = eventring.pop();
      ringoutput.IncrementErrorCounters();
 
 
      // Accumulate the running sum to calculate the event based running average
      eventsum.AccumulateRunningSum(ringoutput);
 
      // Fill the histograms
      historootfile->FillHistograms(ringoutput);
 
      // Fill mps tree branches
      treerootfile->FillTreeBranches(ringoutput);
      treerootfile->FillTree("evt");
 
      // Fill RNTuple if enabled
#ifdef HAS_RNTUPLE_SUPPORT
      treerootfile->FillNTupleFields(ringoutput);
      treerootfile->FillNTuple("evt");
#endif
 
      // Process data handlers
          datahandlerarray_evt.ProcessDataHandlerEntry();
 
          // Fill data handler histograms
          historootfile->FillHistograms(datahandlerarray_evt);
 
          // Fill data handler tree branches
          datahandlerarray_evt.FillTreeBranches(treerootfile);
 
          // Fill data handler RNTuple fields if enabled
#ifdef HAS_RNTUPLE_SUPPORT
          datahandlerarray_evt.FillNTupleFields(treerootfile);
#endif
 
          // Load the event into the helicity pattern
          helicitypattern.LoadEventData(ringoutput);
 
      if (helicitypattern.PairAsymmetryIsGood()) {
            patternsum.AccumulatePairRunningSum(helicitypattern);
 
        // Fill pair tree branches
        burstrootfile->FillTreeBranches(helicitypattern.GetPairYield());
        burstrootfile->FillTreeBranches(helicitypattern.GetPairAsymmetry());
        burstrootfile->FillTreeBranches(helicitypattern.GetPairDifference());
        burstrootfile->FillTree("pr");
 
        // Fill pair RNTuples if enabled
#ifdef HAS_RNTUPLE_SUPPORT
        burstrootfile->FillNTupleFields("pr_yield", helicitypattern.GetPairYield());
        burstrootfile->FillNTupleFields("pr_asym", helicitypattern.GetPairAsymmetry());
        burstrootfile->FillNTuple("pr_yield");
        burstrootfile->FillNTuple("pr_asym");
#endif
 
        // Clear the data
        helicitypattern.ClearPairData();
      }
 
          // Check to see if we can calculate helicity pattern asymmetry, do so, and report if it worked
          if (helicitypattern.IsGoodAsymmetry()) {
              patternsum.AccumulateRunningSum(helicitypattern);
 
              // Fill histograms
              historootfile->FillHistograms(helicitypattern);
 
              // Fill helicity tree branches
              treerootfile->FillTreeBranches(helicitypattern);
              treerootfile->FillTree("mul");
 
              // Fill helicity RNTuple if enabled
#ifdef HAS_RNTUPLE_SUPPORT
              treerootfile->FillNTupleFields(helicitypattern);
              treerootfile->FillNTuple("mul");
#endif
 
              // Process data handlers
              datahandlerarray_mul.ProcessDataHandlerEntry();
              datahandlerarray_burst.ProcessDataHandlerEntry();
 
              // Fill data handler histograms
              historootfile->FillHistograms(datahandlerarray_mul);
 
              // Fill data handler tree branches
              datahandlerarray_mul.FillTreeBranches(treerootfile);
 
              // Fill data handler RNTuple fields if enabled
#ifdef HAS_RNTUPLE_SUPPORT
              datahandlerarray_mul.FillNTupleFields(treerootfile);
#endif
 
              // Fill the pattern into the sum for this burst
              patternsum_per_burst.AccumulateRunningSum(helicitypattern);
 
              // Accumulate data handler arrays
              //datahandlerarray_burst.AccumulateRunningSum(datahandlerarray_mul);
 
              // Burst mode
              if (patternsum_per_burst.IsEndOfBurst()) {
 
                // Calculate average over this burst
                patternsum_per_burst.CalculateRunningAverage();
 
                // Fill the burst into the sum over all bursts
                burstsum.AccumulateRunningSum(patternsum_per_burst);
 
                if (gQwOptions.GetValue<bool>("print-burstsum")) {
                  QwMessage << " Running average of this burst" << QwLog::endl;
                  QwMessage << " =============================" << QwLog::endl;
                  patternsum_per_burst.PrintValue();
                }
 
                // Fill histograms
                burstrootfile->FillHistograms(patternsum_per_burst);
 
                // Fill burst tree branches
                burstrootfile->FillTreeBranches(patternsum_per_burst);
                burstrootfile->FillTree("burst");
 
                // Fill burst RNTuple if enabled
#ifdef HAS_RNTUPLE_SUPPORT
                burstrootfile->FillNTupleFields(patternsum_per_burst);
                burstrootfile->FillNTuple("burst");
#endif
 
                // Finish data handler for burst
                datahandlerarray_burst.FinishDataHandler();
 
                // Fill data handler histograms
                burstrootfile->FillHistograms(datahandlerarray_burst);
 
                // Fill data handler tree branches
                datahandlerarray_burst.FillTreeBranches(burstrootfile);
 
                // Fill data handler RNTuple fields if enabled
#ifdef HAS_RNTUPLE_SUPPORT
                datahandlerarray_burst.FillNTupleFields(burstrootfile);
#endif
 
        helicitypattern.IncrementBurstCounter();
        datahandlerarray_mul.UpdateBurstCounter(helicitypattern.GetBurstCounter());
        datahandlerarray_burst.UpdateBurstCounter(helicitypattern.GetBurstCounter());
                // Clear the data
                patternsum_per_burst.ClearEventData();
                datahandlerarray_burst.ClearEventData();
              }
 
              // Clear the data
              helicitypattern.ClearEventData();
 
      } // helicitypattern.IsGoodAsymmetry()
 
        } // eventring.IsReady()
 
      } // detectors.ApplySingleEventCuts()
 
    } // end of loop over events
 
    // Unwind event ring
    QwMessage << "Unwinding event ring" << QwLog::endl;
    eventring.Unwind();
 
    // Stop event loop instrumentation
#ifdef CALLGRIND_START_INSTRUMENTATION
    if (gQwOptions.GetValue<bool>("callgrind-instr-stop-event-loop")) {
      CALLGRIND_STOP_INSTRUMENTATION;
      QwMessage << "Stapped callgrind instrumentation" << QwLog::endl;
    }
#endif
 
    //  TODO Drain event run
 
    //  Finalize burst
    if (patternsum_per_burst.HasBurstData()){
      // Calculate average over this burst
      patternsum_per_burst.CalculateRunningAverage();
 
      // Fill the burst into the sum over all bursts
      burstsum.AccumulateRunningSum(patternsum_per_burst);
 
      if (gQwOptions.GetValue<bool>("print-burstsum")) {
    QwMessage << " Running average of this burst" << QwLog::endl;
    QwMessage << " =============================" << QwLog::endl;
    patternsum_per_burst.PrintValue();
      }
 
      // Fill histograms
      burstrootfile->FillHistograms(patternsum_per_burst);
 
      // Fill burst tree branches
      burstrootfile->FillTreeBranches(patternsum_per_burst);
      burstrootfile->FillTree("burst");
 
      // Fill burst RNTuple if enabled
#ifdef HAS_RNTUPLE_SUPPORT
      burstrootfile->FillNTupleFields(patternsum_per_burst);
      burstrootfile->FillNTuple("burst");
#endif
 
      // Finish data handler for burst
      datahandlerarray_burst.FinishDataHandler();
 
      // Fill data handler histograms
      burstrootfile->FillHistograms(datahandlerarray_burst);
 
      // Fill data handler tree branches
      datahandlerarray_burst.FillTreeBranches(burstrootfile);
 
      // Fill data handler RNTuple fields if enabled
#ifdef HAS_RNTUPLE_SUPPORT
      datahandlerarray_burst.FillNTupleFields(burstrootfile);
#endif
      patternsum_per_burst.PrintIndexMapFile(run_number);
    }
 
    //  Perform actions at the end of the event loop on the
    //  detectors object, which ought to have handles for the
    //  MPS based histograms.
    ringoutput.AtEndOfEventLoop();
 
    QwMessage << "Number of events processed at end of run: "
              << eventbuffer.GetPhysicsEventNumber() << QwLog::endl;
 
    // Finish data handlers
    datahandlerarray_evt.FinishDataHandler();
    datahandlerarray_mul.FinishDataHandler();
 
    // Calculate running averages
    eventsum.CalculateRunningAverage();
    patternsum.CalculateRunningAverage();
    burstsum.CalculateRunningAverage();
 
    // This will calculate running averages over single helicity events
    if (gQwOptions.GetValue<bool>("print-runningsum")) {
      QwMessage << " Running average of events" << QwLog::endl;
      QwMessage << " =========================" << QwLog::endl;
      eventsum.PrintValue();
    }
    treerootfile->FillTreeBranches(eventsum);
    treerootfile->FillTree("evts");
 
    // Fill running sum RNTuple if enabled
#ifdef HAS_RNTUPLE_SUPPORT
    treerootfile->FillNTupleFields(eventsum);
    treerootfile->FillNTuple("evts");
#endif
 
    if (gQwOptions.GetValue<bool>("print-patternsum")) {
      QwMessage << " Running average of patterns" << QwLog::endl;
      QwMessage << " =========================" << QwLog::endl;
      patternsum.PrintValue();
    }
    treerootfile->FillTreeBranches(patternsum);
    treerootfile->FillTree("muls");
 
    // Fill pattern sum RNTuple if enabled
#ifdef HAS_RNTUPLE_SUPPORT
    treerootfile->FillNTupleFields(patternsum);
    treerootfile->FillNTuple("muls");
#endif
 
    if (gQwOptions.GetValue<bool>("print-burstsum")) {
      QwMessage << " Running average of bursts" << QwLog::endl;
      QwMessage << " =========================" << QwLog::endl;
      burstsum.PrintValue();
    }
    burstrootfile->FillTreeBranches(burstsum);
    burstrootfile->FillTree("bursts");
 
    // Fill burst sum RNTuple if enabled
#ifdef HAS_RNTUPLE_SUPPORT
    burstrootfile->FillNTupleFields(burstsum);
    burstrootfile->FillNTuple("bursts");
#endif
 
    //  Construct objects
    burstrootfile->ConstructObjects("objects", helicitypattern);
 
    /*  Write to the root file, being sure to delete the old cycles  *
     *  which were written by Autosave.                              *
     *  Doing this will remove the multiple copies of the ntuples    *
     *  from the root file.                                          *
     *                                                               *
     *  Then, we need to delete the histograms here.                 *
     *  If we wait until the subsystem destructors, we get a         *
     *  segfault; but in addition to that we should delete them      *
     *  here, in case we run over multiple runs at a time.           */
    if (treerootfile == historootfile) {
      // Use different write methods based on output format
#ifdef HAS_RNTUPLE_SUPPORT
      if (gQwOptions.GetValue<bool>("enable-rntuples") && gQwOptions.GetValue<bool>("disable-trees")) {
        // RNTuple-only mode: use Close() for proper RNTuple finalization
        treerootfile->Close();
      } else {
#endif
        // TTree mode or mixed mode: use Write() for explicit tree writing
        treerootfile->Write(0, TObject::kOverwrite);
        treerootfile->Close();
#ifdef HAS_RNTUPLE_SUPPORT
      }
#endif
      delete treerootfile; treerootfile = 0; burstrootfile = 0; historootfile = 0;
    } else {
      // Use different write methods based on output format
#ifdef HAS_RNTUPLE_SUPPORT
      if (gQwOptions.GetValue<bool>("enable-rntuples") && gQwOptions.GetValue<bool>("disable-trees")) {
        // RNTuple-only mode: use Close() for proper RNTuple finalization
        treerootfile->Close();
        burstrootfile->Close();
        historootfile->Close();
      } else {
#endif
        // TTree mode or mixed mode: use Write() for explicit tree writing
        treerootfile->Write(0, TObject::kOverwrite);
        burstrootfile->Write(0, TObject::kOverwrite);
        historootfile->Write(0, TObject::kOverwrite);
        treerootfile->Close();
        burstrootfile->Close();
        historootfile->Close();
#ifdef HAS_RNTUPLE_SUPPORT
      }
#endif
      delete treerootfile; treerootfile = 0;
      delete burstrootfile; burstrootfile = 0;
      delete historootfile; historootfile = 0;
    }
 
    //  Print the event cut error summary for each subsystem
    if (gQwOptions.GetValue<bool>("print-errorcounters")) {
      QwMessage << " ------------ error counters ------------------ " << QwLog::endl;
      ringoutput.PrintErrorCounters();
    }
 
    if (gQwOptions.GetValue<bool>("write-promptsummary")) {
      //      runningsum.WritePromptSummary(&promptsummary, "yield");
      // runningsum.WritePromptSummary(&promptsummary, "asymmetry");
      //      runningsum.WritePromptSummary(&promptsummary, "difference");
      datahandlerarray_mul.WritePromptSummary(&promptsummary, "asymmetry");
      patternsum.WritePromptSummary(&promptsummary);
      promptsummary.PrintCSV(eventbuffer.GetPhysicsEventNumber(),eventbuffer.GetStartSQLTime(), eventbuffer.GetEndSQLTime());
    }
    //  Read from the database
    #ifdef __USE_DATABASE__
    database.SetupOneRun(eventbuffer);
 
    // Each subsystem has its own Connect() and Disconnect() functions.
    if (database.AllowsWriteAccess()) {
      patternsum.FillDB(&database);
      patternsum.FillErrDB(&database);
      epicsevent.FillDB(&database);
      ringoutput.FillDB_MPS(&database, "optics");
    }
    #endif // __USE_DATABASE__
 
    //epicsevent.WriteEPICSStringValues();
 
    //  Close event buffer stream
    eventbuffer.CloseStream();
 
 
 
    //  Report run summary
    eventbuffer.ReportRunSummary();
    eventbuffer.PrintRunTimes();
  } // end of loop over runs
 
  QwMessage << "I have done everything I can do..." << QwLog::endl;
 
  return 0;
}