Index (swimmer 2.0-SNAPSHOT API)

A B C D E F G H I J L M N O P R S T U V W X Y Z _
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

a - Variable in class cnuphys.adaptiveSwim.geometry.Plane
a(int, int) - Method in class cnuphys.rk4.ButcherTableau
AAdaptiveStopper - Class in cnuphys.adaptiveSwim
AAdaptiveStopper(double[], double, double, SwimTrajectory) - Constructor for class cnuphys.adaptiveSwim.AAdaptiveStopper: Create an stopper
accept(double, double[]) - Method in class cnuphys.adaptiveSwim.AAdaptiveStopper: Accept a new integration step
accept(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveLineStopper: Accept a new integration step
accept(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveSphereStopper: Accept a new integration step
accumulate(Bxdl, Bxdl, double[], double[], FieldProbe) - Static method in class cnuphys.swim.Bxdl: Accumulate the integral of b cross dl
actionPerformed(ActionEvent) - Method in class cnuphys.swim.SwimMenu
AdaptiveBeamlineSwimTest - Class in cnuphys.adaptiveSwim.test
AdaptiveBeamlineSwimTest() - Constructor for class cnuphys.adaptiveSwim.test.AdaptiveBeamlineSwimTest
AdaptiveCylinderStopper - Class in cnuphys.adaptiveSwim
AdaptiveCylinderStopper(double[], double, Cylinder, double, SwimTrajectory) - Constructor for class cnuphys.adaptiveSwim.AdaptiveCylinderStopper: Cylinder stopper (does check max path length)
AdaptiveDefaultStopper - Class in cnuphys.adaptiveSwim
AdaptiveDefaultStopper(double[], double, SwimTrajectory) - Constructor for class cnuphys.adaptiveSwim.AdaptiveDefaultStopper: Rho stopper (does check max path length)
AdaptiveLineStopper - Class in cnuphys.adaptiveSwim
AdaptiveLineStopper(double[], double, Line, double, SwimTrajectory) - Constructor for class cnuphys.adaptiveSwim.AdaptiveLineStopper: Line stopper (does check max path length)
AdaptivePlaneStopper - Class in cnuphys.adaptiveSwim: Stopper for swimming to a plane
AdaptivePlaneStopper(double[], double, Plane, double, SwimTrajectory) - Constructor for class cnuphys.adaptiveSwim.AdaptivePlaneStopper: Rho stopper (does check max path length)
AdaptiveResultDiff - Class in cnuphys.adaptiveSwim.test
AdaptiveResultDiff(AdaptiveSwimResult, AdaptiveSwimResult) - Constructor for class cnuphys.adaptiveSwim.test.AdaptiveResultDiff
AdaptiveRhoStopper - Class in cnuphys.adaptiveSwim: Stopper for swimming to a fixed cylindrical cs radius (rho) value
AdaptiveRhoStopper(double[], double, double, double, SwimTrajectory) - Constructor for class cnuphys.adaptiveSwim.AdaptiveRhoStopper: Rho stopper (does check max path length)
adaptiveRK(int, double, SwimZStateVector, double, double, double[]) - Method in class cnuphys.swimZ.SwimZ: Swim to a fixed z over short distances using RK adaptive stepsize
adaptiveRK(int, double, SwimZStateVector, SwimZStateVector, double, double, double[]) - Method in class cnuphys.swimZ.SwimZ: Swim to a fixed z using RK adaptive stepsize
AdaptiveSectorSwimTest - Class in cnuphys.adaptiveSwim.test
AdaptiveSectorSwimTest() - Constructor for class cnuphys.adaptiveSwim.test.AdaptiveSectorSwimTest
AdaptiveSphereStopper - Class in cnuphys.adaptiveSwim
AdaptiveSphereStopper(double[], double, Sphere, double, SwimTrajectory) - Constructor for class cnuphys.adaptiveSwim.AdaptiveSphereStopper: Cylinder stopper (does check max path length)
AdaptiveSStopper - Class in cnuphys.adaptiveSwim: For when we want to swim a precise path length
AdaptiveSStopper(double[], double, double, SwimTrajectory) - Constructor for class cnuphys.adaptiveSwim.AdaptiveSStopper: Pathlength stopper
adaptiveStep(double[], double[], double, double, double, double, IDerivative, IStopper, ButcherTableau, double[], double[]) - Method in class cnuphys.rk4.RungeKutta: Integrator that uses the RungeKutta advance with a Butcher Tableau and adaptive stepsize This version uses an IRk4Listener to notify the listener that the next step has been advanced.
adaptiveStep(double[], double, double, double, IDerivative, IStopper, IRkListener, ButcherTableau, double[], double[]) - Method in class cnuphys.rk4.RungeKutta: Integrator that uses the RungeKutta advance with a Butcher Tableau and adaptive stepsize This version uses an IRk4Listener to notify the listener that the next step has been advanced.
adaptiveStep(double[], double, double, double, IDerivative, IStopper, IRkListener, ButcherTableau, double, double[], double[]) - Method in class cnuphys.rk4.RungeKutta: Integrator that uses the RungeKutta advance with a Butcher Tableau and adaptive stepsize.
adaptiveStep(double[], double, double, double, List<Double>, List<double[]>, IDerivative, IStopper, ButcherTableau, double[], double[]) - Method in class cnuphys.rk4.RungeKutta: Integrator that uses the RungeKutta advance with a Butcher Tableau and adaptive stepsize and a tolerance vector.
adaptiveStep(double[], double, double, double, List<Double>, List<double[]>, IDerivative, IStopper, ButcherTableau, double, double[], double[]) - Method in class cnuphys.rk4.RungeKutta: Integrator that uses the RungeKutta advance with a Butcher Tableau and adaptive stepsize.
AdaptiveStepResult - Class in cnuphys.adaptiveSwim
AdaptiveStepResult() - Constructor for class cnuphys.adaptiveSwim.AdaptiveStepResult
adaptiveStepToTf(double[], double, double, double, IDerivative, IStopper, IRkListener, double[], double[]) - Method in class cnuphys.rk4.RungeKuttaZ: Integrator that uses the RungeKutta advance with a Butcher Tableau and adaptive stepsize This version uses an IRk4Listener to notify the listener that the next step has been advanced.
adaptiveStepToTf(double[], double, double, double, List<Double>, List<double[]>, IDerivative, IStopper, double[], double[]) - Method in class cnuphys.rk4.RungeKuttaZ: Integrator that uses the RungeKutta advance with a Butcher Tableau and adaptive stepsize and a tolerance vector.
AdaptiveSwimException - Exception in cnuphys.adaptiveSwim: Used for exceptions in the adaptive step size swim package
AdaptiveSwimException(String) - Constructor for exception cnuphys.adaptiveSwim.AdaptiveSwimException
AdaptiveSwimmer - Class in cnuphys.adaptiveSwim: A swimmer for adaptive stepsize integrators.
AdaptiveSwimmer() - Constructor for class cnuphys.adaptiveSwim.AdaptiveSwimmer: Create a swimmer using the current active field
AdaptiveSwimmer(IMagField) - Constructor for class cnuphys.adaptiveSwim.AdaptiveSwimmer: Create a swimmer specific to a magnetic field
AdaptiveSwimmer(MagneticField) - Constructor for class cnuphys.adaptiveSwim.AdaptiveSwimmer: Create a swimmer specific to a magnetic field
AdaptiveSwimResult - Class in cnuphys.adaptiveSwim
AdaptiveSwimResult(boolean) - Constructor for class cnuphys.adaptiveSwim.AdaptiveSwimResult: Create a container for the swim results for default of 6D state vector
AdaptiveSwimResult(int, boolean) - Constructor for class cnuphys.adaptiveSwim.AdaptiveSwimResult: Create a container for the swim results
AdaptiveSwimUtilities - Class in cnuphys.adaptiveSwim
AdaptiveSwimUtilities() - Constructor for class cnuphys.adaptiveSwim.AdaptiveSwimUtilities
AdaptiveSwimUtilities.DebugLevel - Enum Class in cnuphys.adaptiveSwim
AdaptiveTests - Class in cnuphys.adaptiveSwim.test
AdaptiveTests() - Constructor for class cnuphys.adaptiveSwim.test.AdaptiveTests
AdaptiveZStopper - Class in cnuphys.adaptiveSwim
AdaptiveZStopper(double[], double, double, double, SwimTrajectory) - Constructor for class cnuphys.adaptiveSwim.AdaptiveZStopper: Z stopper (does check max path length)
add(double[]) - Method in class cnuphys.swim.SwimTrajectory
add(double[], double) - Method in class cnuphys.swim.SwimTrajectory
add(double, double, double, double, double, double) - Method in class cnuphys.swim.SwimTrajectory
add(SwimZStateVector) - Method in class cnuphys.swimZ.SwimZResult: Add a state vector into the trajectory
addLundStyle(LundId, Color) - Static method in class cnuphys.lund.LundStyle: Add a lund style into the database
addMCTrajectory(SwimTrajectory) - Static method in class cnuphys.swim.Swimming: Add a trajectory to the mc collection
addReconTrajectory(SwimTrajectory) - Static method in class cnuphys.swim.Swimming: Add a trajectory to the recon collection
addSwimTrajectoryListener(SwimTrajectoryListener) - Static method in class cnuphys.swim.Swimming: Add a magnetic field change listener
addToFeedback(List<String>) - Method in class cnuphys.swim.SwimTrajectory2D: Add to the feedback strings
addTrajectory(TrajectorySummary) - Method in class cnuphys.swimtest.TestTrajectories: add a summary to the collection
advance(double, double[], double[], double, IDerivative, double[], double[]) - Method in interface cnuphys.rk4.IAdvance: Advance the solution by one step of the independent variable.
advance(double, double[], double[], double, IDerivative, double[], double, AdaptiveStepResult) - Method in class cnuphys.adaptiveSwim.ButcherAdvance
advance(double, double[], double[], double, IDerivative, double[], double, AdaptiveStepResult) - Method in interface cnuphys.adaptiveSwim.IAdaptiveAdvance: Advance the solution by one step of the independent variable.
advance(double, double[], double[], double, IDerivative, double[], double, AdaptiveStepResult) - Method in class cnuphys.adaptiveSwim.RK4HalfStepAdvance
angleBetween(double[], double[]) - Static method in class cnuphys.swim.util.VectorSupport: Get the angle between two vectors
angleBetween(Vector, Vector) - Static method in class cnuphys.adaptiveSwim.geometry.Vector: Compute the angle between two vectors in radians
angleBetweenDeg(Vector, Vector) - Static method in class cnuphys.adaptiveSwim.geometry.Vector: Compute the angle between two vectors in degrees
ARGONRADLEN - Static variable in class cnuphys.swimZ.SwimZ: Argon radiation length in cm
asciiFileToString(File) - Static method in class cnuphys.lund.AsciiReadSupport: Read an entire ascii file into a single string.
AsciiReader - Class in cnuphys.lund: Simplifies the reading of an ascii file.
AsciiReader(File) - Constructor for class cnuphys.lund.AsciiReader: Constructor
AsciiReadSupport - Class in cnuphys.lund: Support for simpe ASCII reads
AsciiReadSupport() - Constructor for class cnuphys.lund.AsciiReadSupport

B

b - Variable in class cnuphys.adaptiveSwim.geometry.Plane
b(int) - Method in class cnuphys.rk4.ButcherTableau
B - Variable in class cnuphys.swimZ.SwimZDerivative
bdiff(int) - Method in class cnuphys.rk4.ButcherTableau
BeamLineStopper - Class in cnuphys.swim
BeamLineStopper(double, double) - Constructor for class cnuphys.swim.BeamLineStopper
beamLineTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveBeamlineSwimTest
bstar(int) - Method in class cnuphys.rk4.ButcherTableau
ButcherAdvance - Class in cnuphys.adaptiveSwim
ButcherAdvance(int, ButcherTableau) - Constructor for class cnuphys.adaptiveSwim.ButcherAdvance
ButcherTableau - Class in cnuphys.rk4
Bxdl - Class in cnuphys.swim
Bxdl() - Constructor for class cnuphys.swim.Bxdl
BXDL_IDX - Static variable in class cnuphys.swim.SwimTrajectory: index for the accumulated integral |B x dL| component (kG-m)

C

c - Variable in class cnuphys.adaptiveSwim.geometry.Plane
c(int) - Method in class cnuphys.rk4.ButcherTableau
C - Static variable in class cnuphys.swim.Swimmer
C - Static variable in class cnuphys.swimZ.SwimZ: The speed of light in these units: (GeV/c)(1/kG)(1/cm)
CASH_KARP - Static variable in class cnuphys.rk4.ButcherTableau
centerComponent(Component) - Static method in class cnuphys.lund.LundTrackDialog: Center a component.
charge - Variable in class cnuphys.adaptiveSwim.test.InitialValues: The integer charge
charge - Variable in class cnuphys.swim.util.TrajectorySummary
charge - Variable in class cnuphys.swimtest.RandomData
charge - Variable in class cnuphys.swimtest.SwimTestData
CLAS_Tolerance - Static variable in class cnuphys.swim.Swimmer
clear() - Method in class cnuphys.lund.TrajectoryTable: Clear all the data from the table
clear() - Method in class cnuphys.lund.TrajectoryTableModel: Clear all the data
clear() - Method in class cnuphys.swim.SwimTrajectory: Clear the trajectory
clearAllTrajectories() - Static method in class cnuphys.swim.Swimming: Clear all trajectories
clearAuxTrajectories() - Static method in class cnuphys.swim.Swimming: Clear all the aux trajectories.
clearMCTrajectories() - Static method in class cnuphys.swim.Swimming: Clear all the mc trajectories.
clearReconTrajectories() - Static method in class cnuphys.swim.Swimming: Clear all the recon trajectories.
closestDistance(Point2D.Double) - Method in class cnuphys.swim.SwimTrajectory2D: Get the minimum distance to the trajectory.
cnuphys.adaptiveSwim - package cnuphys.adaptiveSwim
cnuphys.adaptiveSwim.geometry - package cnuphys.adaptiveSwim.geometry
cnuphys.adaptiveSwim.test - package cnuphys.adaptiveSwim.test
cnuphys.lund - package cnuphys.lund
cnuphys.rk4 - package cnuphys.rk4
cnuphys.swim - package cnuphys.swim
cnuphys.swim.util - package cnuphys.swim.util
cnuphys.swimtest - package cnuphys.swimtest
cnuphys.swimZ - package cnuphys.swimZ
colNames - Static variable in class cnuphys.lund.TrajectoryTableModel
columnWidths - Static variable in class cnuphys.lund.TrajectoryTableModel
commentChar - Static variable in class cnuphys.lund.AsciiReadSupport
CommonBorder() - Constructor for class cnuphys.lund.LundTrackDialog.CommonBorder
CommonBorder(String) - Constructor for class cnuphys.lund.LundTrackDialog.CommonBorder
compareTo(LundId) - Method in class cnuphys.lund.LundId: Compare based on Id.
computeBDL(FieldProbe) - Method in class cnuphys.swim.SwimTrajectory: Compute the integral B cross dl.
computesError() - Method in interface cnuphys.rk4.IAdvance: Reports whether this advancer knows how to compute an error array
constantPhiPlane(double) - Static method in class cnuphys.adaptiveSwim.geometry.Plane: Create a plane of constant azimuthal angle phi
constantPhiPlane(double) - Static method in class cnuphys.swim.util.Plane: Create a plane of constant azimuthal angle phi
Constants - Class in cnuphys.adaptiveSwim.geometry
Constants() - Constructor for class cnuphys.adaptiveSwim.geometry.Constants
contained(double, double, double, double) - Method in class cnuphys.swim.util.Plane: See if a point is contained (on) a plane
copy(double[], double[]) - Method in class cnuphys.adaptiveSwim.AAdaptiveStopper: Copy a state vector
copy(SwimZStateVector) - Method in class cnuphys.swimZ.SwimZStateVector: Copy from another state vector
CoshLike - Static variable in class cnuphys.rk4.RkTest
count - Variable in class cnuphys.swimtest.RandomData
count() - Method in class cnuphys.swimtest.SwimTestData
countEvents(File) - Method in class cnuphys.lund.LundFileSupport
countLines(File) - Static method in class cnuphys.lund.AsciiReadSupport: Count the lines in an ASCII file, without skipping comment
countNonCommentLines(File) - Static method in class cnuphys.lund.AsciiReadSupport: Counts the number of non-comment lines in a file
createPlane(double[], double) - Static method in class cnuphys.swim.util.Plane: Create a plane from a normal vector and a distance to the plane
createPlane(double[], double[]) - Static method in class cnuphys.swim.util.Plane: Create a plane from a normal vector and a point on the plane
createPlane(double, double, double, double) - Static method in class cnuphys.swim.util.Plane: Create a plane from a normal vector and a distance to the plane
createTestTraj(long, int) - Static method in class cnuphys.swimtest.CreateTestTrajectories
CreateTestTrajectories - Class in cnuphys.swimtest
CreateTestTrajectories() - Constructor for class cnuphys.swimtest.CreateTestTrajectories
createTiltedPlane(double) - Static method in class cnuphys.swim.util.Plane: Create a plane in the clas12 tilted system
createVector(double...) - Static method in class cnuphys.swim.util.VectorSupport: Create a vector as a double array from its components
cross(double[], double[]) - Static method in class cnuphys.swim.util.VectorSupport: Get the vector cross product.
cross(Vector, Vector) - Static method in class cnuphys.adaptiveSwim.geometry.Vector: The cross product of two vectors
cross(Vector, Vector, Vector) - Static method in class cnuphys.adaptiveSwim.geometry.Vector: The in-place cross product of two vectors
crossedBoundary() - Method in class cnuphys.adaptiveSwim.AdaptiveCylinderStopper: Did we cross the boundary?
crossedBoundary() - Method in class cnuphys.adaptiveSwim.AdaptiveRhoStopper: Did we cross the boundary?
crossedBoundary() - Method in class cnuphys.swim.DefaultCylinderStopper: Did we cross the boundary
crossedBoundary() - Method in class cnuphys.swim.DefaultRhoStopper: Did we cross the boundary
crossedBoundary() - Method in class cnuphys.swim.NewPlaneStopper: Did we cross the boundary
Cylinder - Class in cnuphys.adaptiveSwim.geometry: A cylinder is defined by a centerline and a radius
Cylinder(double[], double[], double) - Constructor for class cnuphys.adaptiveSwim.geometry.Cylinder: Create a cylinder
Cylinder(Line, double) - Constructor for class cnuphys.adaptiveSwim.geometry.Cylinder: Create a cylinder
cylinderTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveTests: Test swimming to a cylinder

D

d - Variable in class cnuphys.adaptiveSwim.geometry.Plane
data - Variable in class cnuphys.lund.TrajectoryTableModel
DefaultCylinderStopper - Class in cnuphys.swim: This stopper is to stop at the boundary of an arbitrary cylinder
DefaultCylinderStopper(double[], double, double, Cylinder, double) - Constructor for class cnuphys.swim.DefaultCylinderStopper: Cylinder stopper that looks at boundary (does check max path length)
DefaultDerivative - Class in cnuphys.swim
DefaultDerivative(int, double, FieldProbe) - Constructor for class cnuphys.swim.DefaultDerivative: The derivative for swimming through a magnetic field
DefaultListener - Class in cnuphys.swim
DefaultListener() - Constructor for class cnuphys.swim.DefaultListener: Create a default listener that simply tracks the total number of steps taken and stores the last step.
DefaultPlaneStopper - Class in cnuphys.swim
DefaultPlaneStopper(double, double, double, Plane, double, int) - Constructor for class cnuphys.swim.DefaultPlaneStopper: Plane stopper that checks Rmax (and sMax)
DefaultPlaneStopper(double, double, Plane, double, int) - Constructor for class cnuphys.swim.DefaultPlaneStopper: Plane stopper that doesn't check max R (does check max path length)
DefaultRhoStopper - Class in cnuphys.swim: This stopper is to stop at a fixed value of the cylindrical coordinate rho.
DefaultRhoStopper(double[], double, double, double, double, double) - Constructor for class cnuphys.swim.DefaultRhoStopper: Rho stopper that doesn't check max R (does check max path length)
DefaultStopper - Class in cnuphys.rk4: Default stopper in fact never stops!
DefaultStopper() - Constructor for class cnuphys.rk4.DefaultStopper
DefaultSwimStopper - Class in cnuphys.swim
DefaultSwimStopper(double) - Constructor for class cnuphys.swim.DefaultSwimStopper: A default swim stopper that will stop if either a max pathlength is exceeded or if a radial coordinate is exceeded
DefaultZStopper - Class in cnuphys.swim
DefaultZStopper() - Constructor for class cnuphys.swim.DefaultZStopper
DefaultZStopper(double, double, double, double, boolean) - Constructor for class cnuphys.swim.DefaultZStopper: Z stopper that doesn't check max R (does check max path length)
DefaultZStopper(double, double, double, double, double, boolean) - Constructor for class cnuphys.swim.DefaultZStopper: Z stopper that checks Rmax (and sMax)
DEFMAXSTEPSIZE - Static variable in class cnuphys.rk4.RungeKutta
DEFMAXSTEPSIZE - Static variable in class cnuphys.rk4.RungeKuttaZ
DEFMINSTEPSIZE - Static variable in class cnuphys.rk4.RungeKutta
DEFMINSTEPSIZE - Static variable in class cnuphys.rk4.RungeKuttaZ
delDifference(AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the Euclidean distance between the last point of two results.
derivative(double, double[], double[]) - Method in interface cnuphys.rk4.IDerivative: Compute the derivatives given the value of the independent variable and the values of the function.
derivative(double, double[], double[]) - Method in class cnuphys.swim.DefaultDerivative: Compute the derivatives given the value of s (path length) and the values of the state vector.
derivative(double, double[], double[]) - Method in class cnuphys.swim.SectorDerivative: Compute the derivatives given the value of s (path length) and the values of the state vector.
derivative(double, double[], double[]) - Method in class cnuphys.swimZ.SectorSwimZDerivative: Compute the derivatives given the value of the independent variable and the values of the function.
derivative(double, double[], double[]) - Method in class cnuphys.swimZ.SwimZDerivative: Compute the derivatives given the value of the independent variable and the values of the function.
diff(double[], double[]) - Static method in class cnuphys.swim.util.VectorSupport: The vector difference a - b
difference(Point, Point) - Static method in class cnuphys.adaptiveSwim.geometry.Point: Get the difference between two points
difference(Point, Point, Point) - Static method in class cnuphys.adaptiveSwim.geometry.Point: Get the in-place difference between two points
difference(Vector, Vector) - Static method in class cnuphys.adaptiveSwim.geometry.Vector: Get the difference between two vectors
difference(Vector, Vector, Vector) - Static method in class cnuphys.adaptiveSwim.geometry.Vector: Get the in-place difference between two vectors
DIRCOSX_IDX - Static variable in class cnuphys.swim.SwimTrajectory: index for the px/p direction cosine
DIRCOSY_IDX - Static variable in class cnuphys.swim.SwimTrajectory: index for the py/p direction cosine
DIRCOSZ_IDX - Static variable in class cnuphys.swim.SwimTrajectory: index for the pz/p direction cosine
directionSign(double, double, double) - Method in class cnuphys.swim.util.Plane: Get the sign of a point relative to a plane.
distance(double, double, double) - Method in class cnuphys.adaptiveSwim.geometry.Cylinder: Get the shortest distance between the surface of this infinite cylinder and a point.
distance(double, double, double) - Method in class cnuphys.adaptiveSwim.geometry.Line: Get the shortest distance between this line (as an infinite line) and a point
distance(double, double, double) - Method in class cnuphys.adaptiveSwim.geometry.Plane: Distance from a point to the plane
distance(double, double, double) - Method in class cnuphys.adaptiveSwim.geometry.Point: Compute the distance to another point
distance(double, double, double) - Method in class cnuphys.adaptiveSwim.geometry.Sphere: Get the shortest distance between the surface of this sphere and a point.
distance(Point) - Method in class cnuphys.adaptiveSwim.geometry.Cylinder: Get the shortest distance between the surface of this infinite cylinder and a point.
distance(Point) - Method in class cnuphys.adaptiveSwim.geometry.Line: Get the shortest distance between this line (as an infinite line) and a point
distance(Point) - Method in class cnuphys.adaptiveSwim.geometry.Plane: Distance from a point to the plane
distance(Point) - Method in class cnuphys.adaptiveSwim.geometry.Point: Compute the distance to another point
distance(Point) - Method in class cnuphys.adaptiveSwim.geometry.Sphere: Get the shortest distance between the surface of this sphere and a point.
distanceBetweenSaves - Variable in class cnuphys.swimtest.SwimTestData
distanceToPlane(double, double, double) - Method in class cnuphys.swim.util.Plane: Get the perpendicular distance for a point to the plane
done() - Method in class cnuphys.lund.AsciiReader: Done reading
DORMAND_PRINCE - Static variable in class cnuphys.rk4.ButcherTableau
dot(double[], double[]) - Static method in class cnuphys.swim.util.VectorSupport: Usual inner product
dot(double, double, double) - Method in class cnuphys.swim.util.Plane: Get the common construct a*x + b*y + c*z -d for the plane defined by ax + by + cz = d
dot(Point) - Method in class cnuphys.adaptiveSwim.geometry.Point: The dot product of this "vector" with another vector
dot(Point, Point) - Static method in class cnuphys.adaptiveSwim.geometry.Point: The dot product of two vectors or points
doubleFormat(double, int) - Static method in class cnuphys.lund.DoubleFormat: Format a double
doubleFormat(double, int, boolean) - Static method in class cnuphys.lund.DoubleFormat: Format a double
doubleFormat(double, int, int) - Static method in class cnuphys.lund.DoubleFormat: Format a double, switching from fixed to scientific notation.
DoubleFormat - Class in cnuphys.lund
DoubleFormat() - Constructor for class cnuphys.lund.DoubleFormat
dR(SwimZStateVector, double[]) - Method in class cnuphys.swimZ.SwimZStateVector: Compute the difference between this state vector's location and another state vector's location
drawLineForLegend(Graphics, int, int) - Method in class cnuphys.lund.LundId: Draw a line for use on a toolbar user component, most likely
driver(double, IDerivative, IAdaptiveStopper, IAdaptiveAdvance, double, double[]) - Static method in class cnuphys.adaptiveSwim.AdaptiveSwimUtilities: Basic adaptive step size driver that tries to integrate from s = 0 to s = sf, where sf is in the stopper object.

E

END - Static variable in class cnuphys.adaptiveSwim.geometry.Constants: Used to indicate end, as in a line segment
etched - Variable in class cnuphys.lund.LundTrackDialog.CommonBorder
Example - Class in cnuphys.swim: This class gives an example of swimming a Lund particle
Example() - Constructor for class cnuphys.swim.Example

F

fbColor - Static variable in class cnuphys.swim.SwimTrajectory2D
FEHLBERG_ORDER5 - Static variable in class cnuphys.rk4.ButcherTableau
finalDeltaZ(double) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Used for testing z swim.
finalLocationString() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: A final location string
finalPositionDifference(SwimTrajectory, SwimTrajectory) - Static method in class cnuphys.swim.TrajectoryCompare: Compare the distance between final positions
finalStateVector - Variable in class cnuphys.swim.util.TrajectorySummary
first() - Method in class cnuphys.swimZ.SwimZResult: Get the first state vector
firstSectorChangeIndex() - Method in class cnuphys.swim.SwimTrajectory2D: Get the index of the first sector change.
FIXEDRHO - Enum constant in enum class cnuphys.lund.LundTrackDialog.SWIM_ALGORITHM
FIXEDS - Enum constant in enum class cnuphys.lund.LundTrackDialog.SWIM_ALGORITHM
FIXEDZ - Enum constant in enum class cnuphys.lund.LundTrackDialog.SWIM_ALGORITHM
font - Variable in class cnuphys.lund.LundTrackDialog.CommonBorder
fromHash(String) - Static method in class cnuphys.lund.GeneratedParticleRecord

G

geantToLund(int) - Static method in class cnuphys.lund.LundSupport: Convert a geant ID onto a Lund (PDG) id.
GeneratedParticleRecord - Class in cnuphys.lund: Holds the Lund ID, vertex, momentum, and the initial angles giving the direction of the particle's momentum.
GeneratedParticleRecord(int, double, double, double, double, double, double) - Constructor for class cnuphys.lund.GeneratedParticleRecord
get() - Method in class cnuphys.swimtest.TestTrajectories: Get the initial step size
get(double) - Method in class cnuphys.lund.LundSupport: Finds an LundId object based on the given particle id.
get(int) - Method in class cnuphys.lund.LundSupport: Finds an LundId object based on the given particle id.
get(int, int) - Method in class cnuphys.lund.LundSupport: Finds an LundId object based on the given particle id.
getAccuracy() - Method in class cnuphys.swimtest.TestTrajectories: Get the z stopping accuracy
getArray(int) - Method in class cnuphys.swim.SwimTrajectory: Get an array of elements of the state vector
getAuxTrajectories() - Static method in class cnuphys.swim.Swimming: Get all the cached aux trajectories
getAveragePhi() - Method in class cnuphys.swim.SwimTrajectory: Get the average phi for this trajectory based on positions, not directions
getBDL(FieldProbe) - Method in class cnuphys.swimZ.SwimZResult: Get the approximate integral |B x dL|
getBDLDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the signed difference in BDL
getCenter() - Method in class cnuphys.adaptiveSwim.geometry.Line: Get the center of the line
getCharge() - Method in class cnuphys.lund.GeneratedParticleRecord: Get the integer charge
getCharge() - Method in class cnuphys.lund.LundId: Get the charge of the particle in e's.
getCharge() - Method in class cnuphys.lund.TrajectoryRowData: Get the charge in units of e.
getChargeCoulombs() - Method in class cnuphys.lund.LundId: Get the charge in Coulombs
getChargeX3() - Method in class cnuphys.lund.LundId: Return three times the charge, in units of e.
getColumnCount() - Method in class cnuphys.lund.TrajectoryTableModel: Get the number of columns
getComputedBDL() - Method in class cnuphys.swim.SwimTrajectory: Get the total BDL integral if computed
getCount() - Method in class cnuphys.swim.DefaultListener: Get the number of steps taken
getCVTbased(int) - Static method in class cnuphys.lund.LundSupport: Obtain the LundID object for a cvt based particle
getDelP() - Method in class cnuphys.adaptiveSwim.geometry.Line: Get the p1-po "dP" segment
getDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the signed difference in the final state vectors 2 - 1
getDistance() - Method in class cnuphys.adaptiveSwim.AdaptiveCylinderStopper: Get the current value of the distance (positive definite)
getElectron() - Static method in class cnuphys.lund.LundSupport: Obtain the LundID object for an electron
getEndpoint(int) - Method in class cnuphys.adaptiveSwim.geometry.Line: Get one of the endpoints
getEps() - Static method in class cnuphys.swim.Swimmer: Get the tolerance used by the CLAS_Toleance array
getEps() - Method in class cnuphys.swimZ.SwimZ: Get the tolerance used by the CLAS_Toleance array
getFillColor() - Method in class cnuphys.lund.LundStyle: Get the fill color
getFinalAbsMomentumDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff
getFinalAbsPositionDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff
getFinalAbsSDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the absolute difference between the final path lengths (2-1)
getFinalAbsZDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the signed final difference in z, z2 - z1
getFinalPhi() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: get the final phi in degrees
getFinalPhiDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the signed final difference in theta, 2 - 1
getFinalR() - Method in class cnuphys.swim.SwimTrajectory: Get the final radial coordinate
getFinalRho() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: get the final rho in meters
getFinalS() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the final path length of the swim
getFinalSDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the signed difference between the final path lengths (2-1)
getFinalSector() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the final sector of the swim
getFinalT() - Method in class cnuphys.rk4.DefaultStopper
getFinalT() - Method in interface cnuphys.rk4.IStopper: Get the final independent variable (typically path length in meters)
getFinalT() - Method in class cnuphys.swim.BeamLineStopper: Get the final path length in meters
getFinalT() - Method in class cnuphys.swim.DefaultCylinderStopper: Get the final path length in meters
getFinalT() - Method in class cnuphys.swim.DefaultPlaneStopper
getFinalT() - Method in class cnuphys.swim.DefaultRhoStopper: Get the final path length in meters
getFinalT() - Method in class cnuphys.swim.DefaultSwimStopper: Get the final path length in meters
getFinalT() - Method in class cnuphys.swim.DefaultZStopper: Get the final path length in meters
getFinalT() - Method in class cnuphys.swim.NewPlaneStopper: Get the final path length in meters
getFinalT() - Method in class cnuphys.swim.NumStepStopper
getFinalTheta() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: get the final theta in degrees
getFinalThetaAndPhi() - Method in class cnuphys.swimZ.SwimZResult: Get the values of theta and phi from the momentum and the final state vector.
getFinalThetaDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the signed final difference in theta, 2 - 1
getFinalThreeMomentum() - Method in class cnuphys.swimZ.SwimZResult: Get the final three momentum
getFinalU() - Method in class cnuphys.swim.DefaultCylinderStopper: Get the final value of the state vector
getFinalU() - Method in class cnuphys.swim.DefaultRhoStopper: Get the final value of the state vector
getFinalU() - Method in class cnuphys.swim.NewPlaneStopper: Get the final value of the state vector
getFinalXDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the signed final difference in z, z2 - z1
getFinalYDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the signed final difference in z, z2 - z1
getFinalZDiff() - Method in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Get the signed final difference in z, z2 - z1
getFixedZ() - Method in class cnuphys.swimtest.TestTrajectories: Get the z stopping value in meters
getGeneratedParticleRecord() - Method in class cnuphys.swim.SwimTrajectory: Get the underlying generated particle record
getGeneratedParticleRecord() - Method in class cnuphys.swimZ.SwimZResult: Obtain a GeneratedParticleRecord for this result
getHitbased(int) - Static method in class cnuphys.lund.LundSupport: Obtain the LundID object for a hit based particle
getHNew() - Method in class cnuphys.adaptiveSwim.AdaptiveStepResult
getId() - Method in class cnuphys.lund.LundId: Get the Lund Id of the particle.
getId() - Method in class cnuphys.lund.TrajectoryRowData: Get the lund (pdg) is for the particle
getIndependentVariable() - Method in class cnuphys.swim.DefaultListener: Get the independent variable (e.g., path length) for the last step.
getInitialSector() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the initial sector of the swim
getInitialThetaAndPhi() - Method in class cnuphys.swimZ.SwimZResult: Get the values of theta and phi from the momentum and the initial state vector.
getInitialThreeMomentum() - Method in class cnuphys.swimZ.SwimZResult: Get the initial three momentum
getInitialValues() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the initial values
getInitialValues(Random, int, int, boolean, double, double, double, double, double, double, double, double, double, double, double, double) - Static method in class cnuphys.adaptiveSwim.test.InitialValues: For setting up an array of initial values for testing.
getInstance() - Static method in class cnuphys.lund.LundFileSupport
getInstance() - Static method in class cnuphys.lund.LundSupport: public access to the singleton
getInstance() - Static method in class cnuphys.lund.LundTrackDialog: Access to the dialog singleton
getInstance() - Static method in class cnuphys.swim.SwimMenu: Accessor for the SwimMenu singleton
getIntegralBxdl() - Method in class cnuphys.swim.Bxdl: Get the cumulative integral |b cross dl| in kG-m
getKineticEnergy() - Method in class cnuphys.lund.TrajectoryRowData: Get the kinetic energy in MeV
getKineticEnergy(LundId) - Method in class cnuphys.lund.GeneratedParticleRecord: Get the kinetic energy in GeV.
getLabelForLegend() - Method in class cnuphys.lund.LundId: Get a component to place on a legend.
getLastStateVector() - Method in class cnuphys.swim.DefaultListener: Get the last state vector entries (e.g., [x,y,z, px.p, py/p, pz/p])
getLastTrajectoryPoint() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Gets the last trajectory point if the trajectory was saved.
getLineColor() - Method in class cnuphys.lund.LundStyle: Get the line color
getLundId() - Method in class cnuphys.lund.TrajectoryRowData: Get the lund id
getLundId() - Method in class cnuphys.swim.SwimTrajectory: Get the lund id.
getLundIds() - Method in class cnuphys.lund.LundSupport: Get the list of lundIds
getMass() - Method in class cnuphys.lund.LundId: Get the mass in GeV/c^2
getMass() - Method in class cnuphys.lund.TrajectoryRowData: The mass in MeV
getMassKg() - Method in class cnuphys.lund.LundId: Get the mass in kilograms
getMaxPathLength() - Method in class cnuphys.swimtest.TestTrajectories: Get the max path length
getMaxStepSize() - Method in class cnuphys.adaptiveSwim.AAdaptiveStopper: Get the max step size.
getMaxStepSize() - Method in interface cnuphys.adaptiveSwim.IAdaptiveStopper: Get the max step size.
getMaxStepSize() - Method in class cnuphys.rk4.RungeKutta: Get the maximum step size
getMaxStepSize() - Method in class cnuphys.rk4.RungeKuttaZ: Get the maximum step size
getMCTrajectories() - Static method in class cnuphys.swim.Swimming: Get all the cached mc trajectories
getMinStepSize() - Method in class cnuphys.rk4.RungeKutta: Get the minimum step size
getMinStepSize() - Method in class cnuphys.rk4.RungeKuttaZ: Get the minimum step size
getMomentum() - Method in class cnuphys.lund.GeneratedParticleRecord: Get the momentum in GeV/c
getMomentum() - Method in class cnuphys.lund.TrajectoryRowData: Get the momentum in MeV
getMomentum() - Method in class cnuphys.swimZ.SwimZResult: Get the magnitude of the three momentum, which is constant.
getName() - Method in class cnuphys.lund.LundId: Get the name of the particle.
getName() - Method in class cnuphys.lund.TrajectoryRowData: Get the name of the particle
getNonCommentLineCount() - Method in class cnuphys.lund.AsciiReader
getNStep() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the number of steps of the swim
getNumStage() - Method in class cnuphys.rk4.ButcherTableau: Get the number of stages
getNumStep() - Method in class cnuphys.swimZ.SwimZRange: Get the number of steps
getOriginalPhi() - Method in class cnuphys.swim.SwimTrajectory: Get the original phi for this trajectory
getOriginalTheta() - Method in class cnuphys.swim.SwimTrajectory: Get the original theta for this trajectory
getP(double) - Method in class cnuphys.adaptiveSwim.geometry.Line: Get a point on the line
getP(double, Point) - Method in class cnuphys.adaptiveSwim.geometry.Line: Get a point on the line (in place)
getP0() - Method in class cnuphys.adaptiveSwim.geometry.Line: Get the po "start" point.
getP1() - Method in class cnuphys.adaptiveSwim.geometry.Line: Get the p1 "end" point.
getPath() - Method in class cnuphys.swim.SwimTrajectory2D: Get the 2D path.
getPathlength() - Method in class cnuphys.swim.Bxdl: Get the cumulative pathlength in meters
getPathLength() - Method in class cnuphys.swimZ.SwimZResult: Get the approximate path length in cm
getPhi() - Method in class cnuphys.lund.GeneratedParticleRecord: Get the initial azimuthal angle in degrees.
getPhi() - Method in class cnuphys.lund.TrajectoryRowData: Get the azimuthal angle
getPlotTitle(int, int) - Method in class cnuphys.adaptiveSwim.test.LineTestPlotGrid
getPlotTitle(int, int) - Method in class cnuphys.adaptiveSwim.test.ZTestPlotGrid
getPositron() - Static method in class cnuphys.lund.LundSupport: Obtain the LundID object for a positron
getProbe() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Get the probe being used to swim
getProbe() - Method in class cnuphys.swim.Swimmer: Get the underlying field probe
getProbe() - Method in class cnuphys.swimZ.SwimZ: Get the underlying field probe
getProton() - Static method in class cnuphys.lund.LundSupport: Obtain the LundID object for a proton
getQ() - Method in class cnuphys.swimZ.SwimZResult: Get the integer charge.
getR(int) - Method in class cnuphys.swim.SwimTrajectory: Get the r coordinate in cm for the given index
getReconTrajectories() - Static method in class cnuphys.swim.Swimming: Get all the cached recon trajectories
getReletiveTolerance() - Method in class cnuphys.swimtest.TestTrajectories: Get the relative tolerance used by the swimmer
getRho() - Method in class cnuphys.adaptiveSwim.AdaptiveRhoStopper: Get the current value of rho
getRho() - Method in class cnuphys.swim.DefaultRhoStopper: Get the current value of rho
getRowCount() - Method in class cnuphys.lund.TrajectoryTableModel: Get the number of rows
getS() - Method in class cnuphys.adaptiveSwim.AAdaptiveStopper: Get the current path length
getS() - Method in interface cnuphys.adaptiveSwim.IAdaptiveStopper: Get the current independent variable
getScrollPane() - Method in class cnuphys.lund.TrajectoryTable
getSector(double) - Static method in class cnuphys.adaptiveSwim.AdaptiveSwimUtilities: Get the sector [1..6] from the phi value
getSelectedId() - Method in class cnuphys.lund.LundComboBox
getSetpSize() - Method in class cnuphys.swimZ.SwimZRange: Get the step size.
getSide() - Method in class cnuphys.swim.DefaultPlaneStopper: Get the current side
getSmax() - Method in class cnuphys.adaptiveSwim.AAdaptiveStopper: Get the max or final value of the path length in meters
getSmax() - Method in interface cnuphys.adaptiveSwim.IAdaptiveStopper: Get the max or final value of the independent variable
getSNew() - Method in class cnuphys.adaptiveSwim.AdaptiveStepResult
getSolenoidScale() - Method in class cnuphys.swimtest.TestTrajectories: Get the scale factor used by the solenoid
getSource() - Method in class cnuphys.lund.TrajectoryRowData: Get the source, probably a bank name
getSource() - Method in class cnuphys.swim.SwimTrajectory: Get the source of the trajectory e.g. hbtracking
getSource() - Method in class cnuphys.swim.SwimTrajectory2D: Get the source of the trajectory, e.g., hbtracking
getSpin() - Method in class cnuphys.lund.LundId: Get the spin of the particle.
getStatus() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the status of the swim
getStatus() - Method in class cnuphys.lund.TrajectoryRowData: Get the status
getStroke() - Method in class cnuphys.lund.LundStyle: Get the stroke
getStyle() - Method in class cnuphys.lund.LundId: Get the LundStyle for this id
getStyle(LundId) - Static method in class cnuphys.lund.LundStyle: Get a style for a given lund Id.
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class cnuphys.lund.HeaderRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class cnuphys.lund.SimpleRenderer
getTheta() - Method in class cnuphys.lund.GeneratedParticleRecord: Get the initial polar angle in degrees.
getTheta() - Method in class cnuphys.lund.TrajectoryRowData: Get the polar angle
getThetaAndPhi(SwimZStateVector) - Method in class cnuphys.swimZ.SwimZResult: Get the values of theta and phi from the momentum and a state vector.
getThreeMomentum(SwimZStateVector) - Method in class cnuphys.swimZ.SwimZResult: Get the momentum three-vector for a given statevector, which should be on this result's trajectory.
getThreeMomentum(SwimZStateVector, double[]) - Method in class cnuphys.swimZ.SwimZResult: Get the momentum three-vector for a given statevector, which should be on this result's trajectory.
getTorusPath() - Method in class cnuphys.swimtest.TestTrajectories: Get the path to the torus
getTorusScale() - Method in class cnuphys.swimtest.TestTrajectories: Get the scale factor used by the torus
getTotalEnergy() - Method in class cnuphys.lund.TrajectoryRowData: The total energy in MeV
getTotalEnergy(LundId) - Method in class cnuphys.lund.GeneratedParticleRecord: The total energy in GeV.
getTrackbased(int) - Static method in class cnuphys.lund.LundSupport: Obtain the LundID object for a track based particle
getTrackId() - Method in class cnuphys.lund.TrajectoryRowData: Get the track id
getTrajectory() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the trajectory
getTrajectory() - Method in class cnuphys.swimZ.SwimZResult: Get the trajectory of state vectors
getTrajectory3D() - Method in class cnuphys.swim.SwimTrajectory2D
getTrajectoryModel() - Method in class cnuphys.lund.TrajectoryTable: Get the trajectory data model.
getTransparentFillColor() - Method in class cnuphys.lund.LundStyle: Get a transparent version of the fill color.
getType() - Method in class cnuphys.lund.LundId: Get the type, one of {"Lepton","InterBoson", "Nucleus","Baryon", "Meson"}
getU() - Method in class cnuphys.adaptiveSwim.AAdaptiveStopper: Get the current state vector
getU() - Method in interface cnuphys.adaptiveSwim.IAdaptiveStopper: Get the current value of the state vector
getUf() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the final state vector, usually [x, y, x, px/p, py/p, pz/p] where x, y, z are in meters.
getValueAt(int, int) - Method in class cnuphys.lund.TrajectoryTableModel: Get the value at a given row and column
getVersion() - Static method in class cnuphys.swim.Swimmer: Return the version string
getVertexX() - Method in class cnuphys.lund.GeneratedParticleRecord: Get the the X vertex position in m
getVertexY() - Method in class cnuphys.lund.GeneratedParticleRecord: Get the the Y vertex position in m
getVertexZ() - Method in class cnuphys.lund.GeneratedParticleRecord: Get the the Z vertex position in m
getX() - Method in class cnuphys.swim.SwimTrajectory
getX11Color(String) - Static method in class cnuphys.lund.X11Colors: Gets the named color from the X11 color list.
getX11Color(String, int) - Static method in class cnuphys.lund.X11Colors: Gets an X11 color and sets the alpha
getXAxisLabel(int, int) - Method in class cnuphys.adaptiveSwim.test.LineTestPlotGrid
getXAxisLabel(int, int) - Method in class cnuphys.adaptiveSwim.test.ZTestPlotGrid
getXo() - Method in class cnuphys.lund.TrajectoryRowData: Get the vertex x coordinate
getY() - Method in class cnuphys.swim.SwimTrajectory
getYAxisLabel(int, int) - Method in class cnuphys.adaptiveSwim.test.LineTestPlotGrid
getYAxisLabel(int, int) - Method in class cnuphys.adaptiveSwim.test.ZTestPlotGrid
getYo() - Method in class cnuphys.lund.TrajectoryRowData: Get the vertex y coordinate
getZ() - Method in class cnuphys.swim.SwimTrajectory
getZf() - Method in class cnuphys.swimZ.SwimZRange: Get the final value of z
getZf() - Method in class cnuphys.swimZ.SwimZResult: Get the final z value
getZo() - Method in class cnuphys.lund.TrajectoryRowData: Get the vertex z coordinate
getZo() - Method in class cnuphys.swimZ.SwimZRange: Get the starting value of z
getZo() - Method in class cnuphys.swimZ.SwimZResult: Get the starting z value

H

hashKey() - Method in class cnuphys.lund.GeneratedParticleRecord: Records a reduced precision String version as a hash key
hashKey(GeneratedParticleRecord) - Static method in class cnuphys.lund.GeneratedParticleRecord: Records a reduced precision String version as a hash key
hasTrajectory() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Does this result hold a trajectory?
hdata - Variable in class cnuphys.swim.util.TrajectorySummary
HeaderRenderer - Class in cnuphys.lund
HeaderRenderer() - Constructor for class cnuphys.lund.HeaderRenderer
HGAP - Static variable in class cnuphys.swim.util.TerminalPlot
HMOD - Static variable in class cnuphys.swim.util.TerminalPlot

I

IAdaptiveAdvance - Interface in cnuphys.adaptiveSwim
IAdaptiveStopper - Interface in cnuphys.adaptiveSwim
IAdvance - Interface in cnuphys.rk4
IDerivative - Interface in cnuphys.rk4: This interface is where the specificity of the problem enters.
includeSolenoid() - Method in class cnuphys.swimtest.TestTrajectories: Was the solenoid used
includeTorus() - Method in class cnuphys.swimtest.TestTrajectories: Was the torus used
INFINITE - Static variable in class cnuphys.adaptiveSwim.geometry.Constants: Used to indicate treat as infinite lines
infiniteLineIntersection(double[], double[]) - Method in class cnuphys.swim.util.Plane: Compute the intersection of an infinite line with the plane
InitialValues - Class in cnuphys.adaptiveSwim.test: Hold the initial values of a swim
InitialValues() - Constructor for class cnuphys.adaptiveSwim.test.InitialValues
InitialValues(int, double, double, double, double, double, double) - Constructor for class cnuphys.adaptiveSwim.test.InitialValues: Store the initial conditions of a swim
InitialValues(InitialValues) - Constructor for class cnuphys.adaptiveSwim.test.InitialValues: Copy constructor
initialValuesString() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: A string containing the initial valies
IProjector - Interface in cnuphys.swim
IRkListener - Interface in cnuphys.rk4
isAugmented() - Method in class cnuphys.rk4.ButcherTableau
isBDLComputed() - Method in class cnuphys.swim.SwimTrajectory: Check whether the accumulated integral bdl has been computed
isCellEditable(int, int) - Method in class cnuphys.lund.TrajectoryTableModel: Forces the cell to not be editable.
IStopper - Interface in cnuphys.rk4

J

javaVersion - Variable in class cnuphys.swimtest.SwimTestData

L

last() - Method in class cnuphys.swimZ.SwimZResult: Get the final state vector
lastElement() - Method in class cnuphys.swim.SwimTrajectory: Get the last element
lcount - Variable in class cnuphys.lund.AsciiReader
length() - Method in class cnuphys.adaptiveSwim.geometry.Vector: The length of the vector
length(double[]) - Static method in class cnuphys.swim.util.VectorSupport: Get the magnitude of the vector.
length(float[]) - Static method in class cnuphys.swim.util.VectorSupport: Get the magnitude of the vector.
lengthSquared() - Method in class cnuphys.adaptiveSwim.geometry.Vector: The square of the length of the vector
lengthSquared(double[]) - Static method in class cnuphys.swim.util.VectorSupport: Get the square of the magnitude of the vector.
lengthSquared(float[]) - Static method in class cnuphys.swim.util.VectorSupport: Get the square of the magnitude of the vector.
Line - Class in cnuphys.adaptiveSwim.geometry: 3D line of the form p(t) = po + t*dp where p(t) is a point on the line, po is one point and dp = (p1-po) where p1 is another point.
Line(double[], double[]) - Constructor for class cnuphys.adaptiveSwim.geometry.Line: Create a line from two ponts passed as arrays
Line(Line) - Constructor for class cnuphys.adaptiveSwim.geometry.Line: Copy constructor
Line(Point, Point) - Constructor for class cnuphys.adaptiveSwim.geometry.Line: Create a line from two points on the line.
Line(Vector) - Constructor for class cnuphys.adaptiveSwim.geometry.Line: Create a line from the origing in the direction of a vector
lineIntersection(Line, Point) - Method in class cnuphys.adaptiveSwim.geometry.Plane: Compute the intersection of an infinite line with the plane
lineIntersection(Line, Point, int) - Method in class cnuphys.adaptiveSwim.geometry.Plane
lineTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveTests: Test the swim to a line
LineTestPlotGrid - Class in cnuphys.adaptiveSwim.test
LineTestPlotGrid(double, double, double) - Constructor for class cnuphys.adaptiveSwim.test.LineTestPlotGrid
locDiff(double[], double[]) - Static method in class cnuphys.swimtest.SwimTest: Compute the distance between two vectors
locDiff(double[], SwimZStateVector) - Static method in class cnuphys.swimtest.SwimTest: Compute the distance between a vector and a SwimZStateVector
LOGGER - Static variable in class cnuphys.swim.Swimmer
LundComboBox - Class in cnuphys.lund
LundComboBox(boolean, double, int) - Constructor for class cnuphys.lund.LundComboBox: Constructor for a particle combobox
LundFileSupport - Class in cnuphys.lund
lundId - Variable in class cnuphys.lund.TrajectoryRowData
LundId - Class in cnuphys.lund: Used to store a Lund ID
LundId(String, String, int, double, int, int) - Constructor for class cnuphys.lund.LundId: Create a Lund ID
LundStyle - Class in cnuphys.lund
LundSupport - Class in cnuphys.lund
LundTrackDialog - Class in cnuphys.lund
LundTrackDialog.CommonBorder - Class in cnuphys.lund
LundTrackDialog.SWIM_ALGORITHM - Enum Class in cnuphys.lund

M

main(String[]) - Static method in class cnuphys.adaptiveSwim.geometry.Line
main(String[]) - Static method in class cnuphys.adaptiveSwim.geometry.Plane
main(String[]) - Static method in class cnuphys.lund.DoubleFormat: main program for testing.
main(String[]) - Static method in class cnuphys.lund.GeneratedParticleRecord
main(String[]) - Static method in class cnuphys.lund.LundComboBox
main(String[]) - Static method in class cnuphys.lund.LundSupport: Main program for testing
main(String[]) - Static method in class cnuphys.lund.TrajectoryTable: main program for testing.
main(String[]) - Static method in class cnuphys.rk4.ButcherTableau
main(String[]) - Static method in class cnuphys.rk4.RkTest
main(String[]) - Static method in class cnuphys.swim.Example
main(String[]) - Static method in class cnuphys.swim.Swimming
main(String[]) - Static method in class cnuphys.swim.util.Plane
main(String[]) - Static method in class cnuphys.swim.util.TerminalPlot
main(String[]) - Static method in class cnuphys.swimtest.SwimTest: main program
main(String[]) - Static method in class cnuphys.swimZ.SwimZRange
main(String[]) - Static method in class cnuphys.swimZ.SwimZTest
massAndChargeToLundId(double, int) - Static method in class cnuphys.lund.LundSupport: Returns the Lund ID of a particle given the mass and charge.
MAX_NUMSTEP - Static variable in class cnuphys.adaptiveSwim.AdaptiveSwimUtilities
memoryReport(String) - Static method in class cnuphys.swimtest.SwimTest: Print a memory report
MIN_STEPSIZE - Static variable in class cnuphys.adaptiveSwim.AdaptiveSwimUtilities
MINMOMENTUM - Static variable in class cnuphys.adaptiveSwim.AdaptiveSwimmer
MINMOMENTUM - Static variable in class cnuphys.swim.Swimmer
momentum - Variable in class cnuphys.swim.util.TrajectorySummary

N

NEW - Enum constant in enum class cnuphys.swimtest.SwimTest.SWIMMER
NewPlaneStopper - Class in cnuphys.swim: This stopper is to stop at the boundary of an arbitrary cylinder
NewPlaneStopper(double[], double, double, Plane, double) - Constructor for class cnuphys.swim.NewPlaneStopper: Cylinder stopper that looks at boundary (does check max path length)
nextNonComment(BufferedReader) - Static method in class cnuphys.lund.AsciiReadSupport: Get the next non comment line
nextStep(double, double[], double) - Method in interface cnuphys.rk4.IRkListener: The integration has advanced one step
nextStep(double, double[], double) - Method in class cnuphys.swim.DefaultListener: The integration has advanced one step
nextTokens(BufferedReader) - Static method in class cnuphys.lund.AsciiReadSupport: Get the next tokens from a buffered reader
norm - Variable in class cnuphys.adaptiveSwim.geometry.Plane
normalPrint(double, int) - Method in class cnuphys.swimZ.SwimZStateVector
noStopperTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveTests: Test the basic swim to a final pathlength
notifyListeners() - Static method in class cnuphys.swim.Swimming
NumStepStopper - Class in cnuphys.swim
NumStepStopper(int) - Constructor for class cnuphys.swim.NumStepStopper

O

OFF - Enum constant in enum class cnuphys.adaptiveSwim.AdaptiveSwimUtilities.DebugLevel
OLD - Enum constant in enum class cnuphys.swimtest.SwimTest.SWIMMER
ON - Enum constant in enum class cnuphys.adaptiveSwim.AdaptiveSwimUtilities.DebugLevel

P

p - Variable in class cnuphys.adaptiveSwim.test.InitialValues: The momentum in GeV/c
p - Variable in class cnuphys.lund.TrajectoryRowData
p - Variable in class cnuphys.swimtest.RandomData
p - Variable in class cnuphys.swimtest.SwimTestData
p0 - Variable in class cnuphys.adaptiveSwim.geometry.Plane
paddedPanel(int, int, Component) - Static method in class cnuphys.lund.LundTrackDialog: Create a nice padded panel.
parabolicEstimate(int, double, SwimZStateVector, double, double) - Method in class cnuphys.swimZ.SwimZ: Swim to a fixed z over short distances using a parabolic estimate
parabolicEstimate(int, double, SwimZStateVector, SwimZStateVector, double) - Method in class cnuphys.swimZ.SwimZ: Swim to a fixed z over short distances using a parabolic estimate, without intermediate points
passedSmax() - Method in class cnuphys.adaptiveSwim.AdaptiveCylinderStopper: Did we pas the max path length?
passedSmax() - Method in class cnuphys.adaptiveSwim.AdaptiveRhoStopper: Did we pas the max path length?
passedSmax() - Method in class cnuphys.swim.DefaultCylinderStopper: Did we pas the max path length?
passedSmax() - Method in class cnuphys.swim.DefaultRhoStopper: Did we pas the max path length?
passedSmax() - Method in class cnuphys.swim.NewPlaneStopper: Did we pas the max path length?
PATHLEN_IDX - Static variable in class cnuphys.swim.SwimTrajectory: index for the accumulated path length (m)
perpendicularDistance(Point2D.Double, Point2D.Double, Point2D.Double, Point2D.Double) - Static method in class cnuphys.swim.SwimTrajectory2D: Given two points p0 and p1, imagine a line from p0 to p1.
pFromT(double) - Method in class cnuphys.lund.LundId: Get the momentum from the kinetic energy
phi - Variable in class cnuphys.adaptiveSwim.test.InitialValues: The azimuthal angle in degrees
phi - Variable in class cnuphys.lund.TrajectoryRowData
phi - Variable in class cnuphys.swim.util.TrajectorySummary
phi - Variable in class cnuphys.swimtest.RandomData
phi - Variable in class cnuphys.swimtest.SwimTestData
Plane - Class in cnuphys.adaptiveSwim.geometry: A plane is defined by the equation (r - ro).norm = 0 Where r is an arbitrary point on the plane, ro is a given point on the plane and norm is the normal to the plane
Plane - Class in cnuphys.swim.util: A plane is defined by the equation ax + by + cz = d
Plane(double[], double[]) - Constructor for class cnuphys.adaptiveSwim.geometry.Plane: Create a plane from the normal vector in an array of doubles and a point in the plane in an array, both (x, y, z)
Plane(double, double, double, double) - Constructor for class cnuphys.swim.util.Plane: Create a plane of the form ax + by + cz = d
Plane(Vector, Point) - Constructor for class cnuphys.adaptiveSwim.geometry.Plane: Create a plane from a normal vector and a point on the plane
planeIntersection(Plane) - Method in class cnuphys.adaptiveSwim.geometry.Plane: Obtain the line resulting from the intersection of this plane and another plane
planeQuadCoordinates(float) - Method in class cnuphys.adaptiveSwim.geometry.Plane: Find some coordinates suitable for drawing the plane as a Quad in 3D
planeTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveTests: Test swim to a plane
plot2D(int, int, String, double[], double[]) - Static method in class cnuphys.swim.util.TerminalPlot
Point - Class in cnuphys.adaptiveSwim.geometry
Point() - Constructor for class cnuphys.adaptiveSwim.geometry.Point: Create a point at the origin
Point(double[]) - Constructor for class cnuphys.adaptiveSwim.geometry.Point: Create a point
Point(double, double, double) - Constructor for class cnuphys.adaptiveSwim.geometry.Point: Create a point
Point(Point) - Constructor for class cnuphys.adaptiveSwim.geometry.Point: Copy constructor
pointOnLine(Point) - Method in class cnuphys.adaptiveSwim.geometry.Line: Decide whether a point is on the line using the constant TINY as the max distance
pointOnLine(Point, double) - Method in class cnuphys.adaptiveSwim.geometry.Line: Decide whether a point is on the line
print(PrintStream) - Method in class cnuphys.swim.SwimTrajectory
printOut(PrintStream, String) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Print the result to a print stream, such as System.out.
printOut(PrintStream, String, boolean) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Print the result to a print stream, such as System.out
printSummary(String, int, double, double[], double[]) - Static method in class cnuphys.swim.Swimming
printSummary(String, int, double, double[], double[]) - Static method in class cnuphys.swimtest.SwimTest
printSummary(String, int, double, double, SwimZStateVector, double[]) - Static method in class cnuphys.swimtest.SwimTest
printSwimZ(SwimZStateVector, String) - Static method in class cnuphys.swimtest.SwimTest: Print a vector to the standard output
printSwimZCM(SwimZStateVector, String) - Static method in class cnuphys.swimtest.SwimTest: Print a vector to the standard output
printVect(double[], String) - Static method in class cnuphys.swimtest.SwimTest: Print a vector to the standard output
processLine(String) - Method in class cnuphys.lund.AsciiReader: Process one non comment line from the file.
project(double[], double[]) - Static method in class cnuphys.swim.util.VectorSupport: Project one vector onto another vector
project(double[], Point2D.Double) - Method in interface cnuphys.swim.IProjector: Project a 3D point onto a 2D plane.
project(Vector, Vector) - Static method in class cnuphys.adaptiveSwim.geometry.Vector: project vector a in the direction of vector b

R

radiusOfCurvature(int, double, double) - Static method in class cnuphys.swim.Swimmer: Compute the radius of curvature in cm
RandomData - Class in cnuphys.swimtest
RandomData(int, long) - Constructor for class cnuphys.swimtest.RandomData: Create some random data for a swim test
RandomData(int, long, double, double, double, double, double, double, double, double, double, double, double, double) - Constructor for class cnuphys.swimtest.RandomData: Create some random data for a swim test
randomInitVal(Random, InitialValues, int, boolean, double, double, double, double, double, double, double, double, double, double, double, double) - Static method in class cnuphys.adaptiveSwim.test.InitialValues: For setting up an array of initial values for testing.
randVal(double, double, Random) - Static method in class cnuphys.swimtest.SwimTest: Computer a random double between two limits
removeAuxTrajectory(SwimTrajectory) - Static method in class cnuphys.swim.Swimming: Remove a trajectory from the aux collection
removeMCTrajectory(SwimTrajectory) - Static method in class cnuphys.swim.Swimming: Remove a trajectory from the mc collection
removeReconTrajectory(SwimTrajectory) - Static method in class cnuphys.swim.Swimming: Remove a trajectory from the recon collection
removeSwimTrajectoryListener(SwimTrajectoryListener) - Static method in class cnuphys.swim.Swimming: Remove a SwimTrajectoryListener.
report() - Method in class cnuphys.rk4.ButcherTableau
reset() - Method in class cnuphys.swim.DefaultListener: Call reset if you are going to use the same object again.
result1 - Variable in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff: Used for debugging, to compare the difference between two swims
result2 - Variable in class cnuphys.adaptiveSwim.test.AdaptiveResultDiff
results - Variable in class cnuphys.swimtest.SwimTestData
retrace() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Get the "initial values" that allows a retrace.
retraceTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveTests: Test retracing a swim
rhoTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveTests: Test swimming to a fixed rho
RK4 - Static variable in class cnuphys.rk4.ButcherTableau
RK4HalfStepAdvance - Class in cnuphys.adaptiveSwim: This is a 4th order RungeKutta advancer
RK4HalfStepAdvance(int) - Constructor for class cnuphys.adaptiveSwim.RK4HalfStepAdvance: Create a RK4 half stepper
RkTest - Class in cnuphys.rk4
RkTest() - Constructor for class cnuphys.rk4.RkTest
rMax - Variable in class cnuphys.swimtest.SwimTestData
RULE38 - Static variable in class cnuphys.rk4.ButcherTableau
RungeKutta - Class in cnuphys.rk4: Static methods for Runge-Kutta 4 integration, including a constant stepsize method and an adaptive stepsize method.
RungeKutta() - Constructor for class cnuphys.rk4.RungeKutta: Create a RungeKutta object that can be used for integration
RungeKuttaException - Exception in cnuphys.rk4
RungeKuttaException(String) - Constructor for exception cnuphys.rk4.RungeKuttaException
RungeKuttaZ - Class in cnuphys.rk4: Static methods for Runge-Kutta 4 integration, including a constant stepsize method and an adaptive stepsize method.
RungeKuttaZ() - Constructor for class cnuphys.rk4.RungeKuttaZ: Create a RungeKutta object that can be used for integration

S

scale(double) - Method in class cnuphys.adaptiveSwim.geometry.Vector: Scale a vector
scale(double[], double) - Method in class cnuphys.swim.util.VectorSupport: Scale the vector
sectChangeIndices() - Method in class cnuphys.swim.SwimTrajectory2D: Get the indices of sector changes
sectorAccumulate(int, Bxdl, Bxdl, double[], double[], RotatedCompositeProbe) - Static method in class cnuphys.swim.Bxdl: Accumulate the integral of b cross dl
sectorAdaptiveRK(int, int, double, SwimZStateVector, double, double, double[]) - Method in class cnuphys.swimZ.SwimZ: Swim to a fixed z over short distances using RK adaptive stepsize
sectorChangeCount() - Method in class cnuphys.swim.SwimTrajectory2D: Get the count of sector changes
sectorChangeString(int) - Method in class cnuphys.swim.SwimTrajectory2D: Get a string describing the sector change
sectorComputeBDL(int, RotatedCompositeProbe) - Method in class cnuphys.swim.SwimTrajectory: Compute the integral B cross dl.
SectorDerivative - Class in cnuphys.swim: Used for swimming in the sector system with a rotated composite field
SectorDerivative(int, int, double, RotatedCompositeProbe) - Constructor for class cnuphys.swim.SectorDerivative: The derivative for swimming through a magnetic field
sectorGetBDL(int, FieldProbe) - Method in class cnuphys.swimZ.SwimZResult: Get the approximate integral |B x dL|
sectorGetBDLXZPlane(int, FieldProbe) - Method in class cnuphys.swimZ.SwimZResult: Get the approximate integral |B x dL| in the middle plane
sectorSwim(int, int, double, double, double, double, double, double, double, double, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle in a sector coordinate system.
sectorSwim(int, int, double, double, double, double, double, double, double, double, double, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle in a sector coordinate system.
sectorSwimZ(int, int, double, double, double, double, double, double, double, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Swims a charged particle in a sector coordinate system.
SectorSwimZDerivative - Class in cnuphys.swimZ
SectorSwimZDerivative() - Constructor for class cnuphys.swimZ.SectorSwimZDerivative
SectorTest - Class in cnuphys.swimtest
SectorTest() - Constructor for class cnuphys.swimtest.SectorTest
SEGMENT - Static variable in class cnuphys.adaptiveSwim.geometry.Constants: Used to indicate treat as directed line segments
SerialIO - Class in cnuphys.swim.util
SerialIO() - Constructor for class cnuphys.swim.util.SerialIO
serialRead(byte[]) - Static method in class cnuphys.swim.util.SerialIO: serialRead reads a serializable object from a byte array
serialRead(String) - Static method in class cnuphys.swim.util.SerialIO: Reads a serializable object from a file.
serialRead(String) - Static method in class cnuphys.swimtest.SwimTestData: Reads a serializable object from a file.
serialWrite(SwimTestData, String) - Static method in class cnuphys.swimtest.SwimTestData: serialWrite writes out a SwimTestData object to a file.
serialWrite(Serializable) - Static method in class cnuphys.swim.util.SerialIO: serialWrite writes out a serializable object to a byte array.
serialWrite(Serializable, String) - Static method in class cnuphys.swim.util.SerialIO: serialWrite writes out a serializable object to a file.
set(double) - Method in class cnuphys.swimtest.TestTrajectories: Set the initial step size
set(double[], double...) - Static method in class cnuphys.swim.util.VectorSupport: Set all the components
set(double, double[]) - Method in class cnuphys.swimZ.SwimZStateVector: Set the state vector
set(double, double, double) - Method in class cnuphys.adaptiveSwim.geometry.Point: Set the components of the vector
set(double, double, double) - Method in class cnuphys.adaptiveSwim.geometry.Vector: Set the components of the vector
set(int, double, FieldProbe) - Method in class cnuphys.swim.DefaultDerivative
set(int, double, FieldProbe) - Method in class cnuphys.swimZ.SwimZDerivative: Set the parameters
set(int, int, double, FieldProbe) - Method in class cnuphys.swimZ.SectorSwimZDerivative: Set the parameters
set(int, int, double, RotatedCompositeProbe) - Method in class cnuphys.swim.SectorDerivative
set(Bxdl) - Method in class cnuphys.swim.Bxdl: Set the values based on another object
setAbsoluteTolerance(double) - Method in class cnuphys.swimZ.SwimZ: Set the tolerance used by the CLAS_Tolerance array
setAccuracy(double) - Method in class cnuphys.swim.DefaultZStopper
setAccuracy(double) - Method in class cnuphys.swimtest.TestTrajectories: Set the z stopping accuracy in meters
setCLASTolerance(double) - Static method in class cnuphys.swim.Swimmer: Set the tolerance used by the CLAS_Tolerance array
setData(Vector<TrajectoryRowData>) - Method in class cnuphys.lund.TrajectoryTableModel
setDebugLevel(AdaptiveSwimUtilities.DebugLevel) - Static method in class cnuphys.adaptiveSwim.AdaptiveSwimUtilities: Set the debug level
setFillColor(Color) - Method in class cnuphys.lund.LundStyle: Set the fill color
setFinalS(double) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Set the final path length of the swim
setFinalT(double) - Method in class cnuphys.rk4.DefaultStopper
setFinalT(double) - Method in interface cnuphys.rk4.IStopper: Set the final independent variable (typically path length in meters)
setFinalT(double) - Method in class cnuphys.swim.BeamLineStopper: Set the final path length in meters
setFinalT(double) - Method in class cnuphys.swim.DefaultCylinderStopper
setFinalT(double) - Method in class cnuphys.swim.DefaultPlaneStopper
setFinalT(double) - Method in class cnuphys.swim.DefaultRhoStopper
setFinalT(double) - Method in class cnuphys.swim.DefaultSwimStopper: Set the final path length in meters
setFinalT(double) - Method in class cnuphys.swim.DefaultZStopper
setFinalT(double) - Method in class cnuphys.swim.NewPlaneStopper
setFinalT(double) - Method in class cnuphys.swim.NumStepStopper
setFixedZ(double) - Method in class cnuphys.swimtest.TestTrajectories: Set the z stopping value in meters
setGeneratedParticleRecord(GeneratedParticleRecord) - Method in class cnuphys.swim.SwimTrajectory: Set the generated particle record
setHNew(double) - Method in class cnuphys.adaptiveSwim.AdaptiveStepResult
setIncludeSolenoid(boolean) - Method in class cnuphys.swimtest.TestTrajectories: Set whether we included the solenoid
setIncludeTorus(boolean) - Method in class cnuphys.swimtest.TestTrajectories: Set whether we included the torus
setInitialValies(InitialValues) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Set the initial values
setInitialValues(int, double, double, double, double, double, double) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Set the initial values
setIntegralBxdl(double) - Method in class cnuphys.swim.Bxdl: Set the cumulative integral |b cross dl| in kG-m
setLineColor(Color) - Method in class cnuphys.lund.LundStyle: Set the line color
setLundId(LundId) - Method in class cnuphys.swim.SwimTrajectory: Set the lund id.
setMaxNumberSteps(int) - Static method in class cnuphys.adaptiveSwim.AdaptiveSwimUtilities: Set the maximum number of steps beyond which an error occurs
setMaxPathLength(double) - Method in class cnuphys.swimtest.TestTrajectories: Set the max path length
setMaxStep(double) - Method in class cnuphys.adaptiveSwim.AAdaptiveStopper: Set the current max step
setMaxStepSize(double) - Method in class cnuphys.rk4.RungeKutta: Set the maximum step size
setMaxStepSize(double) - Method in class cnuphys.rk4.RungeKuttaZ: Set the maximum step size
setMinStepSize(double) - Method in class cnuphys.rk4.RungeKutta: Set the minimum step size
setMinStepSize(double) - Method in class cnuphys.rk4.RungeKuttaZ: Set the minimum step size
setNormalDirection(boolean) - Method in class cnuphys.swim.DefaultZStopper
setNotifyOn(boolean) - Static method in class cnuphys.swim.Swimming: Set whether we notify listeners.
setNStep(int) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Set the number of steps of the swim
setPathlength(double) - Method in class cnuphys.swim.Bxdl: Set the cumulative pathlength in meters
setPreferences(PlotCanvas, int, int) - Method in class cnuphys.adaptiveSwim.test.LineTestPlotGrid
setPreferences(PlotCanvas, int, int) - Method in class cnuphys.adaptiveSwim.test.ZTestPlotGrid
setRelativeTolerance(double[]) - Method in class cnuphys.swimtest.TestTrajectories: Set the relative tolerance for the swimmer
setS0(double) - Method in class cnuphys.swim.DefaultZStopper
setSector(int) - Method in class cnuphys.swimZ.SectorSwimZDerivative: Set the sector [1..6]
setSMax(double) - Method in class cnuphys.swim.DefaultZStopper
setSNew(double) - Method in class cnuphys.adaptiveSwim.AdaptiveStepResult
setSolenoidScale(double) - Method in class cnuphys.swimtest.TestTrajectories: Set the scale factor used by the solenoid
setSource(String) - Method in class cnuphys.swim.SwimTrajectory: Set the source of the trajectory e.g. hbtracking
setStatus(int) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Set the status of the swim
setStyle(int, Color) - Static method in class cnuphys.lund.LundSupport: Set the style for a given lund Id
setTargetZ(double) - Method in class cnuphys.swim.DefaultZStopper
setTorusPath(String) - Method in class cnuphys.swimtest.TestTrajectories: Set the path used by the torus
setTorusScale(double) - Method in class cnuphys.swimtest.TestTrajectories: Set the scale factor used by the torus
setTrajectory(SwimTrajectory) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Used to compare to old swimmer
setUf(double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult: Set the final state vector, usually [x, y, x, px/p, py/p, pz/p] where x, y, z are in meters
showMonteCarloTracks() - Method in class cnuphys.swim.SwimMenu: Check whether we should show Monte Carlo tracks
showReconstructedTracks() - Method in class cnuphys.swim.SwimMenu: Check whether we should showreconstructed tracks
signedDistance(double, double, double) - Method in class cnuphys.adaptiveSwim.geometry.Plane: Signed distance from a point to the plane
signedDistance(Point) - Method in class cnuphys.adaptiveSwim.geometry.Plane: Signed distance from a point to the plane
SimpleRenderer - Class in cnuphys.lund
SimpleRenderer() - Constructor for class cnuphys.lund.SimpleRenderer
singleButcherStep(double, double[], double[], double, IDerivative, double[], double[], ButcherTableau) - Static method in class cnuphys.adaptiveSwim.AdaptiveSwimUtilities: Take a single step using a Butcher tableau
singleRK4Step(double, double[], double[], double, IDerivative, double[]) - Static method in class cnuphys.adaptiveSwim.AdaptiveSwimUtilities: Take a single step using basic fourth order RK
size() - Method in class cnuphys.swimtest.TestTrajectories: Get the number of summaries
size() - Method in class cnuphys.swimZ.SwimZResult: Get the number of state vectors in the trajectory
skipLines(int, BufferedReader) - Static method in class cnuphys.lund.AsciiReadSupport: Skip lines in an ascii file
SMALL_BETA - Static variable in class cnuphys.lund.LundTrackDialog
SMALL_GAMMA - Static variable in class cnuphys.lund.LundTrackDialog
SMALL_PHI - Static variable in class cnuphys.lund.LundTrackDialog
SMALL_PHI - Static variable in class cnuphys.swim.SwimTrajectory2D
SMALL_RHO - Static variable in class cnuphys.lund.LundTrackDialog
SMALL_THETA - Static variable in class cnuphys.lund.LundTrackDialog
SMALL_THETA - Static variable in class cnuphys.swim.SwimTrajectory2D
smallDZTest(long, int, double) - Static method in class cnuphys.swimtest.SmallDZTest: Compare the full machinery of SwimZ to the polynomial approximation
SmallDZTest - Class in cnuphys.swimtest
SmallDZTest() - Constructor for class cnuphys.swimtest.SmallDZTest
smallString() - Method in class cnuphys.lund.LundId: Obtain a small string representation.
sMax - Variable in class cnuphys.swimtest.SwimTestData
SMAX_TOLERANCE - Static variable in class cnuphys.swim.Swimmer
solenoidFile - Variable in class cnuphys.swimtest.SwimTestData
source - Variable in class cnuphys.lund.TrajectoryRowData
Sphere - Class in cnuphys.adaptiveSwim.geometry: A sphere centered at an arbitrary point
Sphere(Point, double) - Constructor for class cnuphys.adaptiveSwim.geometry.Sphere: Create a sphere
sphereTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveTests: Test swimming to a cylinder
STANDARD - Enum constant in enum class cnuphys.lund.LundTrackDialog.SWIM_ALGORITHM
START - Static variable in class cnuphys.adaptiveSwim.geometry.Constants: Used to indicate start, as in a line segment
status - Variable in class cnuphys.lund.TrajectoryRowData
stepSize - Variable in class cnuphys.swimtest.SwimTestData
stop() - Method in class cnuphys.lund.AsciiReader: Stop the reading
stopIntegration(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveCylinderStopper
stopIntegration(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveDefaultStopper
stopIntegration(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveLineStopper
stopIntegration(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptivePlaneStopper
stopIntegration(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveRhoStopper
stopIntegration(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveSphereStopper
stopIntegration(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveSStopper
stopIntegration(double, double[]) - Method in class cnuphys.adaptiveSwim.AdaptiveZStopper
stopIntegration(double, double[]) - Method in interface cnuphys.adaptiveSwim.IAdaptiveStopper: Given the current state of the integration, should we stop?
stopIntegration(double, double[]) - Method in class cnuphys.rk4.DefaultStopper
stopIntegration(double, double[]) - Method in interface cnuphys.rk4.IStopper: Given the current state of the integration, should we stop?
stopIntegration(double, double[]) - Method in class cnuphys.swim.BeamLineStopper
stopIntegration(double, double[]) - Method in class cnuphys.swim.DefaultCylinderStopper
stopIntegration(double, double[]) - Method in class cnuphys.swim.DefaultPlaneStopper
stopIntegration(double, double[]) - Method in class cnuphys.swim.DefaultRhoStopper
stopIntegration(double, double[]) - Method in class cnuphys.swim.DefaultSwimStopper
stopIntegration(double, double[]) - Method in class cnuphys.swim.DefaultZStopper
stopIntegration(double, double[]) - Method in class cnuphys.swim.NewPlaneStopper
stopIntegration(double, double[]) - Method in class cnuphys.swim.NumStepStopper
STRINGSPACE - Static variable in class cnuphys.swim.util.TerminalPlot
styles - Static variable in class cnuphys.lund.LundStyle: Hashtable of styles.
summaryString() - Method in class cnuphys.swim.SwimTrajectory2D: Get a summary string for the trajectory
SUPER2 - Static variable in class cnuphys.lund.LundTrackDialog
SUPER2 - Static variable in class cnuphys.swim.SwimTrajectory2D
swim(int, double, double, double, double, double, double, double, double, double, double) - Method in class cnuphys.swim.Swimmer: Swims a Lund particle with a built in stopper for the maximum value of the radial coordinate.
swim(int, double, double, double, double, double, double, double, double, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle.
swim(int, double, double, double, double, double, double, double, double, double, double, double, double) - Method in class cnuphys.swim.Swimmer: Swims a particle with a built it stopper for the maximum value of the radial coordinate.
swim(int, double, double, double, double, double, double, double, double, double, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle.
swim(int, double, double, double, double, double, double, double, double, double, double, double, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle.
swim(int, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle.
swim(int, double, double, double, double, double, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Swim using the current active field.
swim(int, double, double, double, double, double, double, IRkListener, double, double, double) - Method in class cnuphys.swim.Swimmer: Swims a Lund particle with a built it stopper for the maximum value of the radial coordinate.
swim(int, double, double, double, double, double, double, IStopper, double, double, double) - Method in class cnuphys.swim.Swimmer: Swims a Lund particle with a built it stopper for the maximum value of the radial coordinate.
swim(int, double, double, double, double, double, double, IStopper, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle.
swim(int, double, double, double, double, double, double, IStopper, double, double, double, double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle.
swim(int, double, double, double, double, double, double, IStopper, double, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle.
swim(int, double, double, double, double, double, double, IStopper, IRkListener, double, double) - Method in class cnuphys.swim.Swimmer: Swims a charged particle.
swim(int, double, double, double, double, double, double, IStopper, IRkListener, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle for the listener mode, where a callback is called for each advance of the integration Uses an adaptive stepsize algorithm.
swim(int, double, double, double, double, double, double, IStopper, IRkListener, double, double, double, double[]) - Method in class cnuphys.swim.Swimmer: Swims a Lund particle for the listener mode, where a callback is called for each advance of the integration Uses an adaptive stepsize algorithm.
swim(int, double, double, double, double, double, double, Plane, double, double, double, double[], double[]) - Method in class cnuphys.swim.Swimmer: Swims a charged particle.
SWIM_BELOW_MIN_P - Static variable in class cnuphys.adaptiveSwim.AdaptiveSwimmer: A swim was requested for a particle with extremely low momentum
SWIM_SUCCESS - Static variable in class cnuphys.adaptiveSwim.AdaptiveSwimmer: The swim was a success
SWIM_TARGET_MISSED - Static variable in class cnuphys.adaptiveSwim.AdaptiveSwimmer: A target, such as a target rho or z, was not reached before the swim was stopped for some other reason
swimBackwardsToVertex(int, double, double, double, double, double, double) - Static method in class cnuphys.swim.Swimmer
swimCylinder(int, double, double, double, double, double, double, double[], double[], double, double, double, double, double[], AdaptiveSwimResult) - Method in class cnuphys.swim.Swimmer: Swims a particle with a built in stopper at the boundary of an arbitrary cylinder.
swimCylinder(int, double, double, double, double, double, double, double[], double[], double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.swim.Swimmer: Swims a particle with a built in stopper at the boundary of an arbitrary cylinder.
swimCylinder(int, double, double, double, double, double, double, Cylinder, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Swim to an arbitrary infinitely long cylinder using the current active field
swimLine(int, double, double, double, double, double, double, Line, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Swim to an arbitrary infinitely long line using the current active field
SwimMenu - Class in cnuphys.swim: Create the menu that control swimming (trajectory integration)
Swimmer - Class in cnuphys.swim: Handles the swimming of a particle through a magnetic field.
Swimmer() - Constructor for class cnuphys.swim.Swimmer: Create a swimmer using the current active field
Swimmer(IMagField) - Constructor for class cnuphys.swim.Swimmer: Create a swimmer specific to a magnetic field
Swimmer(MagneticField) - Constructor for class cnuphys.swim.Swimmer: Create a swimmer specific to a magnetic field
Swimming - Class in cnuphys.swim
Swimming() - Constructor for class cnuphys.swim.Swimming
swimPlane(int, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double[], AdaptiveSwimResult) - Method in class cnuphys.swim.Swimmer
swimPlane(int, double, double, double, double, double, double, Plane, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Swim to a plane using the current active field
swimRho(int, double, double, double, double, double, double, double, double, double, double, double[], AdaptiveSwimResult) - Method in class cnuphys.swim.Swimmer: Swims a particle with a built in stopper for the rho coordinate.
swimRho(int, double, double, double, double, double, double, double, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Swim to a fixed rho using the current active field
swimRho(int, double, double, double, double, double, double, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.swim.Swimmer: Swims a particle with a built it stopper for the rho coordinate.
swimS(int, double, double, double, double, double, double, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Swim to a definite pathlength.
swimSphere(int, double, double, double, double, double, double, Sphere, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Swim to an arbitrary sphere using the current active field
SwimTest - Class in cnuphys.swimtest
SwimTest() - Constructor for class cnuphys.swimtest.SwimTest
SwimTest.SWIMMER - Enum Class in cnuphys.swimtest
SwimTestData - Class in cnuphys.swimtest
SwimTestData(double, double, double, double, int) - Constructor for class cnuphys.swimtest.SwimTestData
SwimToBeamLine(int, double, double, double, double, double, double, double, double, double, double, double) - Static method in class cnuphys.swim.BeamLineStopper
SwimTrajectory - Class in cnuphys.swim: Combines a generated particle record with a path (trajectory).
SwimTrajectory() - Constructor for class cnuphys.swim.SwimTrajectory: Create a swim trajectory with no initial content
SwimTrajectory(int, double, double, double, double, double, double) - Constructor for class cnuphys.swim.SwimTrajectory: Create a one point trajectory.
SwimTrajectory(int, double, double, double, double, double, double, int) - Constructor for class cnuphys.swim.SwimTrajectory
SwimTrajectory(GeneratedParticleRecord, int) - Constructor for class cnuphys.swim.SwimTrajectory
SwimTrajectory2D - Class in cnuphys.swim: A 2D version of the 3D SwimTrajectory where all points have been projected onto a 2D plane.
SwimTrajectory2D(SwimTrajectory, IProjector) - Constructor for class cnuphys.swim.SwimTrajectory2D: Create a 2D trajectory from the 3D trajectory
SwimTrajectoryListener - Interface in cnuphys.lund
swimZ(int, double, double, double, double, double, double, double, double, double, double, double, AdaptiveSwimResult) - Method in class cnuphys.adaptiveSwim.AdaptiveSwimmer: Swim to a fixed z using the current active field
SwimZ - Class in cnuphys.swimZ: This class holds the parameters and static methods for the swimZ integration.
SwimZ() - Constructor for class cnuphys.swimZ.SwimZ: SwimZ constructor.
SwimZ(IMagField) - Constructor for class cnuphys.swimZ.SwimZ: Create a swimmer specific to a magnetic field
SwimZ(MagneticField) - Constructor for class cnuphys.swimZ.SwimZ: Create a swimmer specific to a magnetic field
SwimZDerivative - Class in cnuphys.swimZ
SwimZDerivative() - Constructor for class cnuphys.swimZ.SwimZDerivative
SwimZDerivative(int, double, FieldProbe) - Constructor for class cnuphys.swimZ.SwimZDerivative: The derivative for swimming through a magnetic field
SwimZException - Exception in cnuphys.swimZ
SwimZException(String) - Constructor for exception cnuphys.swimZ.SwimZException
SwimZRange - Class in cnuphys.swimZ
SwimZRange(double, double, double) - Constructor for class cnuphys.swimZ.SwimZRange: Create an integration range
SwimZResult - Class in cnuphys.swimZ: Holds the result of a swimZ integration
SwimZResult(int, double, double, double, int) - Constructor for class cnuphys.swimZ.SwimZResult: Constructor Create a SwimZResult with the trajectory initialized but empty.
SwimZStateVector - Class in cnuphys.swimZ: Holds the position and track slopes.
SwimZStateVector() - Constructor for class cnuphys.swimZ.SwimZStateVector: Create a state vector for the SwimZ package with all NaNs for the components
SwimZStateVector(double, double[]) - Constructor for class cnuphys.swimZ.SwimZStateVector: Create a state variable from an array (probably from RK integration)
SwimZStateVector(double, double, double, double, double) - Constructor for class cnuphys.swimZ.SwimZStateVector: Constructor for a state vector for the SwimZ package.
SwimZStateVector(double, double, double, double, double, double) - Constructor for class cnuphys.swimZ.SwimZStateVector: Constructor
SwimZStateVector(SwimZStateVector) - Constructor for class cnuphys.swimZ.SwimZStateVector: Create a state variable from another (copy)
SwimZTest - Class in cnuphys.swimZ: A set of methods for testing the swim Z package
SwimZTest() - Constructor for class cnuphys.swimZ.SwimZTest

T

TerminalPlot - Class in cnuphys.swim.util: Just what it sounds like, crude 2D (one data set) terminal scatter plot for quick checks and debugging
TerminalPlot() - Constructor for class cnuphys.swim.util.TerminalPlot
terminateIntegration(double, double[]) - Method in interface cnuphys.rk4.IStopper: Generally this is the same as stop integration.
terminateIntegration(double, double[]) - Method in class cnuphys.swim.DefaultCylinderStopper: Generally this is the same as stop integration.
terminateIntegration(double, double[]) - Method in class cnuphys.swim.DefaultPlaneStopper: Generally this is the same as stop integration.
terminateIntegration(double, double[]) - Method in class cnuphys.swim.DefaultRhoStopper: Generally this is the same as stop integration.
terminateIntegration(double, double[]) - Method in class cnuphys.swim.DefaultZStopper: Generally this is the same as stop integration.
terminateIntegration(double, double[]) - Method in class cnuphys.swim.NewPlaneStopper: Generally this is the same as stop integration.
test() - Static method in class cnuphys.rk4.RkTest
testResults - Variable in class cnuphys.swimtest.SwimTestData
testSectorSwim(int) - Static method in class cnuphys.swimtest.SectorTest
testSwim(int) - Static method in class cnuphys.swim.Swimming
TestTrajectories - Class in cnuphys.swimtest
TestTrajectories() - Constructor for class cnuphys.swimtest.TestTrajectories
TestUniform(double[], double, double, double, IDerivative, IStopper, IRkListener, double[]) - Static method in class cnuphys.rk4.RkTest: Test the uniform step size
theta - Variable in class cnuphys.adaptiveSwim.test.InitialValues: The polar angle in degrees
theta - Variable in class cnuphys.lund.TrajectoryRowData
theta - Variable in class cnuphys.swim.util.TrajectorySummary
theta - Variable in class cnuphys.swimtest.RandomData
theta - Variable in class cnuphys.swimtest.SwimTestData
threadTest(int, int) - Static method in class cnuphys.swimtest.ThreadTest
ThreadTest - Class in cnuphys.swimtest
ThreadTest() - Constructor for class cnuphys.swimtest.ThreadTest
timeToPlane(double, double, double, double, double, double) - Method in class cnuphys.swim.util.Plane: Given a current position and velocity, compute the time to intersect the plane
TIMEzTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveTests
TINY - Static variable in class cnuphys.adaptiveSwim.geometry.Constants: Effectively zero
tokens(String) - Static method in class cnuphys.lund.AsciiReadSupport: This method breaks a string into an array of tokens.
tokens(String, String) - Static method in class cnuphys.lund.AsciiReadSupport: This method breaks a string into an array of tokens.
torusFile - Variable in class cnuphys.swimtest.SwimTestData
toString() - Method in class cnuphys.adaptiveSwim.AdaptiveSwimResult
toString() - Method in class cnuphys.adaptiveSwim.geometry.Line: Get a String representation
toString() - Method in class cnuphys.adaptiveSwim.geometry.Plane
toString() - Method in class cnuphys.adaptiveSwim.geometry.Point: Get a string representation of the Point
toString() - Method in class cnuphys.adaptiveSwim.test.InitialValues
toString() - Method in class cnuphys.lund.GeneratedParticleRecord
toString() - Method in class cnuphys.lund.LundId: Obtain a string representation.
toString() - Method in class cnuphys.lund.LundSupport: Get a string representing a table of Ids.
toString() - Method in class cnuphys.swimZ.SwimZStateVector: Get a string representation
toString(double[]) - Static method in class cnuphys.swim.util.VectorSupport: Returns a string representation of the form: "(x,y,z)" using three decimals points.
toString(double[], int) - Static method in class cnuphys.swim.util.VectorSupport: Returns a string representation of the form: "(x,y,z)".
toStringRaw() - Method in class cnuphys.adaptiveSwim.test.InitialValues
toStringRaw(int) - Method in class cnuphys.swimtest.RandomData
toSwimTrajectory() - Method in class cnuphys.swimZ.SwimZResult: Create a SwimTrajectory for this result object
trackId - Variable in class cnuphys.lund.TrajectoryRowData
trajectoriesChanged() - Method in interface cnuphys.lund.SwimTrajectoryListener: Swam a particle
TrajectoryCompare - Class in cnuphys.swim: static methods useful for comparing trajectories in testing
TrajectoryCompare() - Constructor for class cnuphys.swim.TrajectoryCompare
TrajectoryRowData - Class in cnuphys.lund
TrajectoryRowData(int, LundId, double, double, double, double, double, double, int, String) - Constructor for class cnuphys.lund.TrajectoryRowData: Create a data row for display in the table.
TrajectorySummary - Class in cnuphys.swim.util
TrajectorySummary(int, double, double, double, double[], double[]) - Constructor for class cnuphys.swim.util.TrajectorySummary: Create a summary with vertex at origin
TrajectorySummary(int, double, double, double, double, double, double, double[], double[]) - Constructor for class cnuphys.swim.util.TrajectorySummary: Create a summary
TrajectoryTable - Class in cnuphys.lund
TrajectoryTable() - Constructor for class cnuphys.lund.TrajectoryTable
TrajectoryTableModel - Class in cnuphys.lund
TrajectoryTableModel() - Constructor for class cnuphys.lund.TrajectoryTableModel: Constructor
tx - Variable in class cnuphys.swimZ.SwimZStateVector: the x track slope, px/pz
ty - Variable in class cnuphys.swimZ.SwimZStateVector: the y track slope, py/pz

U

uniformStep(double[], double, double, double[][], double[], IDerivative, IStopper) - Method in class cnuphys.rk4.RungeKutta: Driver that uses the RungeKutta advance with a uniform step size.
uniformStep(double[], double, double, double, IDerivative, IStopper, IRkListener) - Method in class cnuphys.rk4.RungeKutta: Integrator that uses the standard RK4 advance with a uniform step size.
uniformStep(double[], double, double, double, IDerivative, IStopper, IRkListener, ButcherTableau) - Method in class cnuphys.rk4.RungeKutta: Integrator that uses the RungeKutta advance with a Butcher Tableau and constant stepsize.
unitVector() - Method in class cnuphys.adaptiveSwim.geometry.Vector: Get a unit vector in the same direction as this
unitVector(double[]) - Static method in class cnuphys.swim.util.VectorSupport: Obtain a unit vector in the same direction as this vector
unknownLabel - Static variable in class cnuphys.lund.LundId
unknownMinus - Static variable in class cnuphys.lund.LundSupport: Unknown negative lepton
unknownNeutral - Static variable in class cnuphys.lund.LundSupport: Unknown neutral "lepton"
unknownPlus - Static variable in class cnuphys.lund.LundSupport: Unknown positive lepton
update(AdaptiveResultDiff) - Method in class cnuphys.adaptiveSwim.test.LineTestPlotGrid: Update the plots
update(AdaptiveResultDiff) - Method in class cnuphys.adaptiveSwim.test.ZTestPlotGrid: Update the plots
userObject - Variable in class cnuphys.swim.SwimTrajectory: user object

V

valStr(double) - Static method in class cnuphys.lund.GeneratedParticleRecord
valueOf(String) - Static method in enum class cnuphys.adaptiveSwim.AdaptiveSwimUtilities.DebugLevel: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class cnuphys.lund.LundTrackDialog.SWIM_ALGORITHM: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class cnuphys.swimtest.SwimTest.SWIMMER: Returns the enum constant of this class with the specified name.
values() - Static method in enum class cnuphys.adaptiveSwim.AdaptiveSwimUtilities.DebugLevel: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class cnuphys.lund.LundTrackDialog.SWIM_ALGORITHM: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class cnuphys.swimtest.SwimTest.SWIMMER: Returns an array containing the constants of this enum class, in the order they are declared.
Vector - Class in cnuphys.adaptiveSwim.geometry: Ordinary 3D vector
Vector() - Constructor for class cnuphys.adaptiveSwim.geometry.Vector: Create a new vetor with a zero components
Vector(double, double, double) - Constructor for class cnuphys.adaptiveSwim.geometry.Vector: Create a vector
Vector(Point) - Constructor for class cnuphys.adaptiveSwim.geometry.Vector: Create a Vector from a point
VectorSupport - Class in cnuphys.swim.util: Static classes for treating arrays of doubles as 2D or 3D vectors
VectorSupport() - Constructor for class cnuphys.swim.util.VectorSupport
VERBOSE - Enum constant in enum class cnuphys.adaptiveSwim.AdaptiveSwimUtilities.DebugLevel
VERSION - Static variable in class cnuphys.swim.Swimmer
VMOD - Static variable in class cnuphys.swim.util.TerminalPlot

W

withinAccuracy(double, double) - Method in class cnuphys.swim.DefaultZStopper: Is the current z within accuracy

X

x - Variable in class cnuphys.adaptiveSwim.geometry.Point: x component
x - Variable in class cnuphys.swimZ.SwimZStateVector: the x coordinate (cm)
X_IDX - Static variable in class cnuphys.swim.SwimTrajectory: index for the x component (m)
X11Colors - Class in cnuphys.lund
X11Colors() - Constructor for class cnuphys.lund.X11Colors
Xmain(String[]) - Static method in class cnuphys.swimtest.SwimTest: main program
xo - Variable in class cnuphys.adaptiveSwim.test.InitialValues: The coordinate x of the vertex in meters
xo - Variable in class cnuphys.lund.TrajectoryRowData
xo - Variable in class cnuphys.swim.util.TrajectorySummary
xo - Variable in class cnuphys.swimtest.RandomData
xo - Variable in class cnuphys.swimtest.SwimTestData
xxxxxxzTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveTests

Y

y - Variable in class cnuphys.adaptiveSwim.geometry.Point: y component
y - Variable in class cnuphys.swimZ.SwimZStateVector: the y coordinate (cm)
Y_IDX - Static variable in class cnuphys.swim.SwimTrajectory: index for the y component (m)
yo - Variable in class cnuphys.adaptiveSwim.test.InitialValues: The y coordinate of the vertex in meters
yo - Variable in class cnuphys.lund.TrajectoryRowData
yo - Variable in class cnuphys.swim.util.TrajectorySummary
yo - Variable in class cnuphys.swimtest.RandomData
yo - Variable in class cnuphys.swimtest.SwimTestData

Z

z - Variable in class cnuphys.adaptiveSwim.geometry.Point: z component
z - Variable in class cnuphys.swimZ.SwimZStateVector: the z coordinate (cm)
z(int) - Method in class cnuphys.swimZ.SwimZRange: Obtain z for a given step number n [0, numStep]
Z_IDX - Static variable in class cnuphys.swim.SwimTrajectory: index for the z component (m)
zo - Variable in class cnuphys.adaptiveSwim.test.InitialValues: The z coordinate of the vertex in meters
zo - Variable in class cnuphys.lund.TrajectoryRowData
zo - Variable in class cnuphys.swim.util.TrajectorySummary
zo - Variable in class cnuphys.swimtest.RandomData
zo - Variable in class cnuphys.swimtest.SwimTestData
zTest() - Static method in class cnuphys.adaptiveSwim.test.AdaptiveSectorSwimTest
ZTestPlotGrid - Class in cnuphys.adaptiveSwim.test
ZTestPlotGrid(double, double, double) - Constructor for class cnuphys.adaptiveSwim.test.ZTestPlotGrid

_

_accuracy - Variable in class cnuphys.adaptiveSwim.AAdaptiveStopper
_defaultTableau - Static variable in class cnuphys.swim.Swimmer
_dim - Variable in class cnuphys.adaptiveSwim.AAdaptiveStopper
_finalPathLength - Variable in class cnuphys.swim.DefaultSwimStopper
_finalPathLength - Variable in class cnuphys.swim.NumStepStopper
_hLast - Variable in class cnuphys.adaptiveSwim.AAdaptiveStopper
_probe - Variable in class cnuphys.swimZ.SwimZDerivative
_q - Variable in class cnuphys.swimZ.SwimZDerivative
_qv - Variable in class cnuphys.swimZ.SwimZDerivative
_s - Variable in class cnuphys.adaptiveSwim.AAdaptiveStopper
_sf - Variable in class cnuphys.adaptiveSwim.AAdaptiveStopper
_THEMAXSTEP - Static variable in class cnuphys.adaptiveSwim.AAdaptiveStopper
_trajectory - Variable in class cnuphys.adaptiveSwim.AAdaptiveStopper
_u - Variable in class cnuphys.adaptiveSwim.AAdaptiveStopper

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