Index (snr 2.0-SNAPSHOT API)

A B C D E F G H I L M N O P R S T U V W _
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

add(int, int) - Method in class cnuphys.snr.SNRCluster: Add a wire to the wire list for a given layer.
add(Integer) - Method in class cnuphys.snr.WireList: Add a value, do not allow duplicates
addChamber(Rectangle2D.Double) - Method in class cnuphys.snr.test.DetectorTest
addComponents() - Method in class cnuphys.snr.test.NoiseTest: Add the GUI components
addHitsInMask(int, int, int, WireList) - Method in class cnuphys.snr.NoiseReductionParameters: Add wires that are in the masks of the clean data corresponding to a given wire (segment candidate start), layer, and direction
addSegmentStart(int) - Method in class cnuphys.snr.SNRCluster: Add a segment (candidate) start wire
Adjacency - Class in cnuphys.snr
Adjacency() - Constructor for class cnuphys.snr.Adjacency
ANALYZED - Enum constant in enum class cnuphys.snr.test.DetectorTest.DisplayOption
averageWirePosition() - Method in class cnuphys.snr.WireList: Get the average wire position (zero-based) Duplicate weightings are used via the counts array

B

BasicStroke - Class in cnuphys.snr.test
BasicStroke() - Constructor for class cnuphys.snr.test.BasicStroke
binaryString() - Method in class cnuphys.snr.ExtendedWord: Create a binary string representation.
bitCount() - Method in class cnuphys.snr.ExtendedWord: Count all the on bits in the extended word.
bitwiseAnd(ExtendedWord, ExtendedWord, ExtendedWord) - Static method in class cnuphys.snr.ExtendedWord: Perform a bitwise and on two extended words.
bitwiseOr(ExtendedWord, ExtendedWord, ExtendedWord) - Static method in class cnuphys.snr.ExtendedWord: Perform a bitwise or on two extended words.
bitwiseXor(ExtendedWord, ExtendedWord, ExtendedWord) - Static method in class cnuphys.snr.ExtendedWord: Perform a bitwise xor on two extended words.
bleedLeft(int) - Method in class cnuphys.snr.ExtendedWord: Bleed the specified number of bits left.
bleedRight(int) - Method in class cnuphys.snr.ExtendedWord: Bleed the specified number of bits right.
boundary - Variable in class cnuphys.snr.test.ChamberTest: A world coordinate rectangular boundary.
bracketTrack(TrackTest, int, int[]) - Method in class cnuphys.snr.test.ChamberTest: Bracket the range of wires that might be intersected by the track.

C

cellBounds(Rectangle2D.Double, Rectangle, int, int, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: Fill in a pixel rectangle with the cell pixel.
cellRangeWorldBounds(int, int, int, Rectangle2D.Double) - Method in class cnuphys.snr.test.ChamberTest: Get the world boundary of a range of cells.
cellWorldBounds(int, int, Rectangle2D.Double) - Method in class cnuphys.snr.test.ChamberTest: Get the world boundary of a cell.
ChamberTest - Class in cnuphys.snr.test
ChamberTest(DetectorTest, int, NoiseReductionParameters, Rectangle2D.Double) - Constructor for class cnuphys.snr.test.ChamberTest: Create a test chamber--rectangular with uniform rectangular cells.
checkBit(int) - Method in class cnuphys.snr.ExtendedWord: Check if a given bit is on,
Clas12Constants - Class in cnuphys.snr.clas12
Clas12Constants() - Constructor for class cnuphys.snr.clas12.Clas12Constants
Clas12NoiseAnalysis - Class in cnuphys.snr.clas12: One stop shopping for clas12 noise analysis.
Clas12NoiseAnalysis() - Constructor for class cnuphys.snr.clas12.Clas12NoiseAnalysis: Create an analysis object for CLAS12 DCs.
Clas12NoiseAnalysis(SNRAnalysisLevel) - Constructor for class cnuphys.snr.clas12.Clas12NoiseAnalysis: Create an analysis object for CLAS12 DCs
Clas12NoiseResult - Class in cnuphys.snr.clas12
Clas12NoiseResult() - Constructor for class cnuphys.snr.clas12.Clas12NoiseResult
clean() - Method in class cnuphys.snr.SNRCluster: This removes wires from the wire list if there are more than two in a given layer.
clear() - Method in class cnuphys.snr.clas12.Clas12NoiseAnalysis: Clear all the data
clear() - Method in class cnuphys.snr.clas12.Clas12NoiseResult: clear all the results
clear() - Method in class cnuphys.snr.ExtendedWord: Zero all the bits
clear() - Method in class cnuphys.snr.NoiseReductionParameters: Clear all data
clear() - Method in class cnuphys.snr.SNRCluster: Clear the wire lists.
clear() - Method in class cnuphys.snr.WireList
clearBit(int) - Method in class cnuphys.snr.ExtendedWord: Clear the bit at a given location
clearHits() - Method in class cnuphys.snr.test.ChamberTest: clear all the hits
clearTracks() - Method in class cnuphys.snr.test.DetectorTest: Clear all the tracks.
clusters - Variable in class cnuphys.snr.SNRClusterFinder
cnuphys.snr - package cnuphys.snr
cnuphys.snr.clas12 - package cnuphys.snr.clas12
cnuphys.snr.test - package cnuphys.snr.test
computeAdjacency(int, int) - Method in class cnuphys.snr.NoiseReductionParameters: Used in second stage analysis.
computeAdjacency(ExtendedWord[], int, int, int, int) - Static method in class cnuphys.snr.Adjacency: Used in second stage analysis.
computeLine() - Method in class cnuphys.snr.SNRCluster: This computes slope and intercept a line using the layer as the X value and the average wire number as the Y so a slope of 0 looks "vertical".
contains(Point, Rectangle2D.Double, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: See if the pixel point is within the screen boundary of the chamber.
copy(ExtendedWord, ExtendedWord) - Static method in class cnuphys.snr.ExtendedWord: Copy value from one extended word to another.
copyEditableParameters(NoiseReductionParameters) - Method in class cnuphys.snr.NoiseReductionParameters: Copy those parameters that can be edited
countCommonBits(ExtendedWord, ExtendedWord, ExtendedWord, ExtendedWord, ExtendedWord) - Static method in class cnuphys.snr.ExtendedWord
createHit(int, int, HitTest.HitType) - Method in class cnuphys.snr.test.ChamberTest: Create a hit
createWorkSpace() - Method in class cnuphys.snr.NoiseReductionParameters: Create all the workspace needed to remove the noise.

D

DASH - Enum constant in enum class cnuphys.snr.test.LineStyle
DATA - Enum constant in enum class cnuphys.snr.test.DetectorTest.DisplayOption
delFromAverage(int) - Method in class cnuphys.snr.WireList
DetectorTest - Class in cnuphys.snr.test
DetectorTest(double, double, double, double) - Constructor for class cnuphys.snr.test.DetectorTest: Create a test detector.
DetectorTest.DisplayOption - Enum Class in cnuphys.snr.test
DOT - Enum constant in enum class cnuphys.snr.test.LineStyle
DOT_DASH - Enum constant in enum class cnuphys.snr.test.LineStyle
DOUBLE_DASH - Enum constant in enum class cnuphys.snr.test.LineStyle
draw(Graphics, Rectangle2D.Double, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: Draw the chamber.
draw(Graphics, Rectangle2D.Double, Rectangle) - Method in class cnuphys.snr.test.TrackTest: Draw the track.
drawAfter(Graphics, Rectangle2D.Double, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: Draw the chamber.
drawCellOutlines(Graphics, Rectangle2D.Double, Rectangle, Color) - Method in class cnuphys.snr.test.ChamberTest: Draw all the cell outlines efficiently.
drawLeftSegmentCandidates(Graphics, Rectangle2D.Double, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: Draw the segment candidate indications
drawLeftSegmentOutline(Graphics, Rectangle2D.Double, Rectangle, Color) - Method in class cnuphys.snr.test.ChamberTest
drawRightSegmentCandidates(Graphics, Rectangle2D.Double, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: Draw the segment candidate indications
drawRightSegmentOutline(Graphics, Rectangle2D.Double, Rectangle, Color) - Method in class cnuphys.snr.test.ChamberTest

E

encode62(long) - Static method in class cnuphys.snr.ExtendedWord: Encode a long into a base 62 String.
equals(ExtendedWord) - Method in class cnuphys.snr.ExtendedWord: Test for equality with another word
ExtendedWord - Class in cnuphys.snr
ExtendedWord() - Constructor for class cnuphys.snr.ExtendedWord: Creates an empty extended word.
ExtendedWord(int) - Constructor for class cnuphys.snr.ExtendedWord: Creates an extended word made up of an array of longs.
ExtendedWord(long[]) - Constructor for class cnuphys.snr.ExtendedWord: Create using words

F

feedback(Point, Rectangle2D.Double, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: Get a mouse over feedback string.
fill() - Method in class cnuphys.snr.ExtendedWord: Set all bits to 1
findClusters() - Method in class cnuphys.snr.SNRClusterFinder: Find the clusters.
findHit(int, int) - Method in class cnuphys.snr.test.ChamberTest: See if there is a hit at that spot.
findNoise(int[], int[], int[], int[], Clas12NoiseResult) - Method in class cnuphys.snr.clas12.Clas12NoiseAnalysis: This methods takes the data arrays and generates the results.
forceHit(int, int) - Method in class cnuphys.snr.test.ChamberTest
fromHash(String) - Static method in class cnuphys.snr.ExtendedWord: Convert back to an ExtendedWord from a hash key
fromHash62(String) - Static method in class cnuphys.snr.ExtendedWord: Convert back to an ExtendedWord from a hash key

G

generateNoise() - Method in class cnuphys.snr.test.ChamberTest: Generate random noise
generateTracks() - Method in class cnuphys.snr.test.DetectorTest: Generate some random straightline tracks
getAccumulationIncrement() - Static method in class cnuphys.snr.test.TestParameters
getActualHitType() - Method in class cnuphys.snr.test.HitTest: Gets the actual hit type.
getAdjacencyThreshold() - Method in class cnuphys.snr.NoiseReductionParameters: Get the adjacency threshold, used in stage 2 analysis where we look for clusters.
getAllowedMissingLayers() - Method in class cnuphys.snr.NoiseReductionParameters: Returns the number of allowed missing layers.
getAnalyzedNoiseColor() - Static method in class cnuphys.snr.test.TestParameters
getAnalyzedTrackColor() - Static method in class cnuphys.snr.test.TestParameters
getBlobSize() - Static method in class cnuphys.snr.test.TestParameters
getBoundary() - Method in class cnuphys.snr.test.ChamberTest: Get the rectangular boundary of the chamber in world coordinates.
getBounds(Rectangle2D.Double, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: Obtains the bounding rectangle.
getClusterFinder() - Method in class cnuphys.snr.NoiseReductionParameters: Get the cluster finder
getClusters() - Method in class cnuphys.snr.NoiseReductionParameters: Get the list of clusters
getClusters() - Method in class cnuphys.snr.SNRClusterFinder: Get the list of clusters
getComputedHitType() - Method in class cnuphys.snr.test.HitTest: Gets the computed hit type.
getCount(int) - Method in class cnuphys.snr.WireList: Get the repeat count for this wire
getDefaultParameters() - Static method in class cnuphys.snr.NoiseReductionParameters: Get a default set of parameters with CLAS-like numbers
getDisplayOption() - Method in class cnuphys.snr.test.DetectorTest
getDisplayOptionMenu() - Method in class cnuphys.snr.test.DetectorTest: Get the menu that controls boolean display flags.
getEndPoint() - Method in class cnuphys.snr.test.TrackTest
getGenericHitColor() - Static method in class cnuphys.snr.test.TestParameters
getHitColor(HitTest) - Method in class cnuphys.snr.test.ChamberTest: Get the color for a hit
getLayer() - Method in class cnuphys.snr.test.HitTest: Get the layer index [0..] of the hit.
getLeftLayerShifts() - Method in class cnuphys.snr.NoiseReductionParameters: Get the layer shifts for left leaning tracks.
getLeftSegments() - Method in class cnuphys.snr.NoiseReductionParameters: Get the left leaning segment staring wire positions.
getName() - Method in class cnuphys.snr.test.ChamberTest: Get the number of name in this chamber.
getName() - Method in enum class cnuphys.snr.test.LineStyle: Get the nice name of the enum.
getNoiseRate() - Static method in class cnuphys.snr.test.TestParameters
getNoiseReducedOccupancy() - Method in class cnuphys.snr.NoiseReductionParameters: Get the occupancy of the packed data.
getNumHits() - Method in class cnuphys.snr.test.ChamberTest: Get the total number of hits.
getNumLayer() - Method in class cnuphys.snr.NoiseReductionParameters: Get the number of layers per superlayer
getNumNoiseHits() - Method in class cnuphys.snr.test.ChamberTest
getNumRemovedNoiseHits() - Method in class cnuphys.snr.test.ChamberTest
getNumSavedNoiseHits() - Method in class cnuphys.snr.test.ChamberTest
getNumTrackHits() - Method in class cnuphys.snr.test.ChamberTest
getNumWire() - Method in class cnuphys.snr.NoiseReductionParameters: Get the number of wires per layer
getOccupancy() - Method in class cnuphys.snr.test.ChamberTest: Get the fractional raw occupancy of this chamber.
getParameters(int, int) - Method in class cnuphys.snr.clas12.Clas12NoiseAnalysis: Get the parameters for a given 0-based superlayer
getProbBadWire() - Static method in class cnuphys.snr.test.TestParameters
getProbBlob() - Static method in class cnuphys.snr.test.TestParameters
getProbTracks() - Static method in class cnuphys.snr.test.TestParameters: Get the probability of increasing numbers of tracks.
getRandom() - Static method in class cnuphys.snr.test.DetectorTest: Get the shared random number generator
getRawOccupancy() - Method in class cnuphys.snr.NoiseReductionParameters: Get the occupancy of the raw data.
getRealityNoiseColor() - Static method in class cnuphys.snr.test.TestParameters
getRealityTrackColor() - Static method in class cnuphys.snr.test.TestParameters
getReducedOccupancy() - Method in class cnuphys.snr.test.ChamberTest: Get the fractional cleaned occupancy of this chamber.
getRightLayerShifts() - Method in class cnuphys.snr.NoiseReductionParameters: Get the layer shifts for right leaning tracks.
getRightSegments() - Method in class cnuphys.snr.NoiseReductionParameters: Get the right leaning segment staring wire positions.This is meaningful only if the analysis has been performed.
getSavedNoiseColor() - Static method in class cnuphys.snr.test.TestParameters
getSlope() - Method in class cnuphys.snr.SNRCluster: Get the slope of the linear fit
getStartPoint() - Method in class cnuphys.snr.test.TrackTest
getStroke(float, LineStyle) - Static method in class cnuphys.snr.test.TestParameters: Gets a stroke appropriate for the line width and line type.
getThetaMax() - Static method in class cnuphys.snr.test.TestParameters: Get the maximum track tilt angle in degrees.
getTotalNumWires() - Method in class cnuphys.snr.test.ChamberTest: Get the total number of wires.
getTrackColor() - Static method in class cnuphys.snr.test.TestParameters
getValue(String) - Static method in enum class cnuphys.snr.test.LineStyle: Returns the enum value from the name.
getWire() - Method in class cnuphys.snr.test.HitTest: Get the wire index [0..] of the hit.
getWirePosition(int) - Method in class cnuphys.snr.SNRCluster: Used to draw a linear fit to the cluster
getWords() - Method in class cnuphys.snr.ExtendedWord: Get the underlying words

H

hashKey() - Method in class cnuphys.snr.ExtendedWord: Hash this ExtendedWord into a String
hashKey62() - Method in class cnuphys.snr.ExtendedWord: Hash this ExtendedWord into a String in base 62
hasSubset(SNRCluster) - Method in class cnuphys.snr.SNRCluster: The given cluster is a subset of this cluster if all wirelists are subsets
hasSubset(WireList) - Method in class cnuphys.snr.WireList: Is a given list a subset of this list
hitsFromTrack(TrackTest) - Method in class cnuphys.snr.test.ChamberTest: Generate hits from a straight line track
HitTest - Class in cnuphys.snr.test
HitTest(int, int, HitTest.HitType) - Constructor for class cnuphys.snr.test.HitTest
HitTest.HitType - Enum Class in cnuphys.snr.test

I

incrementHitCount() - Method in class cnuphys.snr.test.HitTest: Increments the hit count by one.
index - Variable in class cnuphys.snr.test.ChamberTest
initializeSpace() - Method in class cnuphys.snr.test.ChamberTest: Initialize space
isAnalyzed() - Method in class cnuphys.snr.NoiseReductionParameters
isDisplayTrack() - Method in class cnuphys.snr.test.DetectorTest
isNoiseHit(int, int) - Method in class cnuphys.snr.NoiseReductionParameters: Checks whether a given wire has a noise hit.
isZero() - Method in class cnuphys.snr.ExtendedWord: See if this extended word is zero

L

layerWorldBounds(int, Rectangle2D.Double) - Method in class cnuphys.snr.test.ChamberTest: Get the world boundary of a layer.
LEFT_LEAN - Static variable in class cnuphys.snr.NoiseReductionParameters
LEFT_LEAN - Static variable in class cnuphys.snr.SNRClusterFinder
leftSegmentBounds(Rectangle2D.Double, Rectangle, int, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: Get the bounds for drawing whether there is a potential left segment here
leftSegments - Variable in class cnuphys.snr.NoiseReductionParameters: cumulative left segments.
leftShifts - Static variable in class cnuphys.snr.clas12.Clas12Constants
LineStyle - Enum Class in cnuphys.snr.test
loadBitData() - Method in class cnuphys.snr.test.ChamberTest: Load all the hits into the bit data for noise reduction.
LONG_DASH - Enum constant in enum class cnuphys.snr.test.LineStyle
LONG_DOT_DASH - Enum constant in enum class cnuphys.snr.test.LineStyle

M

main(String[]) - Static method in class cnuphys.snr.ExtendedWord: Main program for testing
main(String[]) - Static method in class cnuphys.snr.test.NoiseTest: Main program for testing
markHits() - Method in class cnuphys.snr.test.ChamberTest: Mark the hit type for each hit
maxShift(int) - Method in class cnuphys.snr.NoiseReductionParameters: Get the maximum shift for a given direction.
missingLayers - Static variable in class cnuphys.snr.clas12.Clas12Constants
missingLayersUsed(int, int) - Method in class cnuphys.snr.NoiseReductionParameters: Get the number of missing layers used to find a segment candidate starting at the given wire in layer 1 (1..6)
mouseClicked(MouseEvent) - Method in class cnuphys.snr.test.DetectorTest
mouseDragged(MouseEvent) - Method in class cnuphys.snr.test.DetectorTest
mouseEntered(MouseEvent) - Method in class cnuphys.snr.test.DetectorTest: The mouse has entered the display area.
mouseExited(MouseEvent) - Method in class cnuphys.snr.test.DetectorTest: The mouse has exited the display area.
mouseMoved(MouseEvent) - Method in class cnuphys.snr.test.DetectorTest
mousePressed(MouseEvent) - Method in class cnuphys.snr.test.DetectorTest
mouseReleased(MouseEvent) - Method in class cnuphys.snr.test.DetectorTest

N

names - Static variable in enum class cnuphys.snr.test.LineStyle: A map for the names of the line styles
negate() - Method in class cnuphys.snr.ExtendedWord: Toggle all the bits in an ExtendedWord.
nextEvent(boolean) - Method in class cnuphys.snr.test.DetectorTest: Generate the next event.
noise - Variable in class cnuphys.snr.clas12.Clas12NoiseResult: noise array, parallel to the dc tdc sector array.
NOISE - Enum constant in enum class cnuphys.snr.test.HitTest.HitType
noiseCount() - Method in class cnuphys.snr.clas12.Clas12NoiseResult: Get the number of noise hits
noiseOff - Static variable in class cnuphys.snr.test.TestParameters: used to "show clean data
NoiseReductionParameters - Class in cnuphys.snr: All the parameters needed for noise reduction.
NoiseReductionParameters() - Constructor for class cnuphys.snr.NoiseReductionParameters: Create the parameters used for SNR analysis
NoiseReductionParameters(int, int[], int[]) - Constructor for class cnuphys.snr.NoiseReductionParameters: Create a NoiseReductionParameter using CLAS12 defaults for the number of superlayers, layers and wires
NoiseReductionParameters(int, int, int, int[], int[]) - Constructor for class cnuphys.snr.NoiseReductionParameters: Create a NoiseReductionParameter using defaults for the number of superlayers, layers and wires
NoiseTest - Class in cnuphys.snr.test
NoiseTest() - Constructor for class cnuphys.snr.test.NoiseTest: Constructor
NUM_LAYER - Static variable in class cnuphys.snr.clas12.Clas12Constants
NUM_SECTOR - Static variable in class cnuphys.snr.clas12.Clas12Constants
NUM_SUPERLAYER - Static variable in class cnuphys.snr.clas12.Clas12Constants
NUM_WIRE - Static variable in class cnuphys.snr.clas12.Clas12Constants
numLayers - Variable in class cnuphys.snr.SNRCluster: The number of layers, probably 6
numWires - Variable in class cnuphys.snr.SNRCluster: The number of wires, probably 112

O

OLDbleedLeft(int) - Method in class cnuphys.snr.ExtendedWord: Bleed the specified number of bits left.
OLDbleedRight(int) - Method in class cnuphys.snr.ExtendedWord: Bleed the specified number of bits right.
ONESTAGE - Enum constant in enum class cnuphys.snr.SNRAnalysisLevel

P

packData(NoiseReductionParameters) - Method in class cnuphys.snr.SNRCluster
packHit(int, int) - Method in class cnuphys.snr.NoiseReductionParameters: pack a hit into the raw data
paintDetector(Graphics) - Method in class cnuphys.snr.test.DetectorTest: Paint the detector
paramString() - Static method in class cnuphys.snr.test.TestParameters

R

randomWord(int, Random, float) - Static method in class cnuphys.snr.ExtendedWord: Create a random word
rawHitCount - Variable in class cnuphys.snr.clas12.Clas12NoiseAnalysis: the raw hit count
REALITY - Enum constant in enum class cnuphys.snr.test.DetectorTest.DisplayOption
remove(Object) - Method in class cnuphys.snr.WireList
removeNoise() - Method in class cnuphys.snr.NoiseReductionParameters: Remove the noise.
removeNoise() - Method in class cnuphys.snr.test.ChamberTest: Apply the noise reduction algorithm.
restoreDefaultWorld() - Method in class cnuphys.snr.test.DetectorTest
RIGHT_LEAN - Static variable in class cnuphys.snr.NoiseReductionParameters
RIGHT_LEAN - Static variable in class cnuphys.snr.SNRClusterFinder
rightSegmentBounds(Rectangle2D.Double, Rectangle, int, Rectangle) - Method in class cnuphys.snr.test.ChamberTest: Get the bounds for drawing whether there is a potential right segment here
rightSegments - Variable in class cnuphys.snr.NoiseReductionParameters: cumulative right segments.
rightShifts - Static variable in class cnuphys.snr.clas12.Clas12Constants

S

screwballEvent() - Method in class cnuphys.snr.test.DetectorTest
segmentStartList - Variable in class cnuphys.snr.SNRCluster: a list for the segment starting points.
SegmentStartList - Class in cnuphys.snr
SegmentStartList() - Constructor for class cnuphys.snr.SegmentStartList: Holds a list of segment starts for a cluster
setAccumulationIncrement(int) - Static method in class cnuphys.snr.test.TestParameters
setAdjacencyThreshold(int) - Method in class cnuphys.snr.NoiseReductionParameters: Set the adjacency threshold, used in stage 2 analysis where we look for clusters.
setAllowedMissingLayers(int) - Method in class cnuphys.snr.NoiseReductionParameters: Set the number of allowed missing layers.
setAnalyzedNoiseColor(Color) - Static method in class cnuphys.snr.test.TestParameters
setAnalyzedTrackColor(Color) - Static method in class cnuphys.snr.test.TestParameters
setBit(int) - Method in class cnuphys.snr.ExtendedWord: Set the bit at a given location
setComputedHitType(HitTest.HitType) - Method in class cnuphys.snr.test.HitTest
setDisplayOption(DetectorTest.DisplayOption) - Method in class cnuphys.snr.test.DetectorTest
setGenericHitColor(Color) - Static method in class cnuphys.snr.test.TestParameters
setLeftLayerShifts(int[]) - Method in class cnuphys.snr.NoiseReductionParameters: Set the left layer shifts used for left leaning segments
setLookForTracks(boolean) - Static method in class cnuphys.snr.NoiseReductionParameters: Deprecated.
doesn't do anything, kept for backwards capability.
setNoiseRate(double) - Static method in class cnuphys.snr.test.TestParameters
setPackedData(ExtendedWord[]) - Method in class cnuphys.snr.NoiseReductionParameters: Set new raw data.
setParameters(int, int, NoiseReductionParameters) - Method in class cnuphys.snr.clas12.Clas12NoiseAnalysis: Set the parameters for a given 0-based superlayer
setProbBadWire(double) - Static method in class cnuphys.snr.test.TestParameters
setProbTracks(double[]) - Static method in class cnuphys.snr.test.TestParameters: Set the probability of increasing numbers of tracks.
setRealityNoiseColor(Color) - Static method in class cnuphys.snr.test.TestParameters
setRealityTrackColor(Color) - Static method in class cnuphys.snr.test.TestParameters
setRightLayerShifts(int[]) - Method in class cnuphys.snr.NoiseReductionParameters: Set the right layer shifts used for right leaning segments
setSNRAnalysisLevel(SNRAnalysisLevel) - Static method in class cnuphys.snr.NoiseReductionParameters: Set the analysis level OneStage: the classic SNR noise analysis TwoStage: the centers of mass are used to remove noise within the masks but disjoint from the segment (hopefully).
setThetaMax(double) - Static method in class cnuphys.snr.test.TestParameters: Set the maximum track tilt angle.
setTrackColor(Color) - Static method in class cnuphys.snr.test.TestParameters
shiftLeft(int) - Method in class cnuphys.snr.ExtendedWord: Shift the extended word left.
shiftLeftAndOr(int) - Method in class cnuphys.snr.ExtendedWord: Shift the extended word left and or with self.
shiftRight(int) - Method in class cnuphys.snr.ExtendedWord: Shift the extended word right.
shiftRightAndOr(int) - Method in class cnuphys.snr.ExtendedWord: Shift the extended word right and or with self.
shiftString(String, int[]) - Method in class cnuphys.snr.test.ChamberTest
showClusters - Static variable in class cnuphys.snr.test.TestParameters: used to show clusters
SNRAnalysisLevel - Enum Class in cnuphys.snr
SNRCluster - Class in cnuphys.snr
SNRCluster(int, int) - Constructor for class cnuphys.snr.SNRCluster
SNRClusterFinder - Class in cnuphys.snr
SNRClusterFinder(NoiseReductionParameters) - Constructor for class cnuphys.snr.SNRClusterFinder: Create a cluster finder, tied to a parameters object
SOLID - Enum constant in enum class cnuphys.snr.test.LineStyle
sort() - Method in class cnuphys.snr.WireList

T

TestParameters - Class in cnuphys.snr.test
TestParameters() - Constructor for class cnuphys.snr.test.TestParameters
TestSupport - Class in cnuphys.snr.test
TestSupport() - Constructor for class cnuphys.snr.test.TestSupport
toLocal(Rectangle2D.Double, Rectangle, Point, double, double) - Static method in class cnuphys.snr.test.TestSupport: This converts a world point to a screen or pixel point.
toLocal(Rectangle2D.Double, Rectangle, Point, Point2D.Double) - Static method in class cnuphys.snr.test.TestSupport: This converts a world point to a screen or pixel point.
toLocal(Rectangle2D.Double, Rectangle, Rectangle, Rectangle2D.Double) - Static method in class cnuphys.snr.test.TestSupport: This converts a world rectangle to a screen or pixel rect.
toString() - Method in class cnuphys.snr.ExtendedWord: Create a string representation.
toString() - Method in class cnuphys.snr.SegmentStartList: A string representation.
toString() - Method in class cnuphys.snr.SNRCluster: String representation
toString() - Method in class cnuphys.snr.WireList: A string representation.
totalRawHitCount() - Method in class cnuphys.snr.NoiseReductionParameters: Total number of raw hits (all layers in this chamber/superlayer)
totalReducedHitCount() - Method in class cnuphys.snr.NoiseReductionParameters: Total number of noise reduced hits (all layers in this chamber/superlayer)
toWorld(Rectangle2D.Double, Rectangle, Point, Point2D.Double) - Static method in class cnuphys.snr.test.TestSupport: This converts a screen or pixel point to a world point.
toWorld(Rectangle2D.Double, Rectangle, Rectangle, Rectangle2D.Double) - Static method in class cnuphys.snr.test.TestSupport: This converts a screen or local rectangle to world rect.
TRACK - Enum constant in enum class cnuphys.snr.test.HitTest.HitType
trackIntersectsLayer(int, TrackTest) - Method in class cnuphys.snr.test.ChamberTest: Check if a track intersects a layer.
trackIntersectsRange(int, int, int, TrackTest) - Method in class cnuphys.snr.test.ChamberTest: Check if a track intersects a range of wires.
TrackTest - Class in cnuphys.snr.test
TrackTest(Point2D.Double, Point2D.Double) - Constructor for class cnuphys.snr.test.TrackTest
TWOSTAGE - Enum constant in enum class cnuphys.snr.SNRAnalysisLevel

U

UNKNOWN - Enum constant in enum class cnuphys.snr.test.HitTest.HitType

V

valueOf(String) - Static method in enum class cnuphys.snr.SNRAnalysisLevel: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class cnuphys.snr.test.DetectorTest.DisplayOption: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class cnuphys.snr.test.HitTest.HitType: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class cnuphys.snr.test.LineStyle: Returns the enum constant of this class with the specified name.
values() - Static method in enum class cnuphys.snr.SNRAnalysisLevel: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class cnuphys.snr.test.DetectorTest.DisplayOption: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class cnuphys.snr.test.HitTest.HitType: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class cnuphys.snr.test.LineStyle: Returns an array containing the constants of this enum class, in the order they are declared.

W

WireList - Class in cnuphys.snr
WireList(int) - Constructor for class cnuphys.snr.WireList: Create a wirelist
wireLists - Variable in class cnuphys.snr.SNRCluster: one wirelist for each layer
words - Variable in class cnuphys.snr.ExtendedWord: Holds the composite words. words[0] is least significant.

_

_almostTransparent - Static variable in class cnuphys.snr.test.ChamberTest
_analysisLevel - Static variable in class cnuphys.snr.NoiseReductionParameters
_maskFillLeft - Static variable in class cnuphys.snr.test.ChamberTest
_maskFillRight - Static variable in class cnuphys.snr.test.ChamberTest

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